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Mutant Information

Mutant Name	FN1577-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1577-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19795889 C-T Hetero INTERGENIC
SBS Chr1 41167253 C-A Hetero INTERGENIC
SBS Chr2 12490443 G-T Hetero INTERGENIC
SBS Chr3 1919318 C-T Hetero INTERGENIC
SBS Chr3 4166211 G-A Hetero INTERGENIC
SBS Chr3 4285777 G-A Hetero INTERGENIC
SBS Chr3 4488257 G-A Hetero INTRON
SBS Chr3 5965060 C-A Hetero INTERGENIC
SBS Chr3 6167447 T-G Hetero INTRON
SBS Chr3 6584019 G-T Hetero INTERGENIC
SBS Chr3 7699190 C-T Homo INTERGENIC
SBS Chr3 9720702 C-T Hetero INTRON
SBS Chr3 11573729 T-A Hetero INTERGENIC
SBS Chr3 28456850 T-G Hetero INTRON
SBS Chr3 30550493 C-T Hetero INTERGENIC
SBS Chr3 30636560 A-G Hetero INTERGENIC
SBS Chr3 36269566 T-C Hetero INTERGENIC
SBS Chr4 1837361 T-A Hetero INTRON
SBS Chr4 17049326 C-T Hetero INTERGENIC
SBS Chr4 32838235 G-A Hetero UTR_3_PRIME
SBS Chr6 9542929 C-T Homo INTERGENIC
SBS Chr6 15795158 C-G Homo INTERGENIC
SBS Chr6 21712578 C-T Hetero INTERGENIC
SBS Chr6 24342384 G-A Hetero INTERGENIC
SBS Chr7 4084668 G-A Hetero INTERGENIC
SBS Chr7 4084669 T-A Hetero INTERGENIC
SBS Chr7 4084670 A-C Hetero INTERGENIC
SBS Chr7 13678067 C-A Hetero INTERGENIC
SBS Chr7 27105939 C-T Hetero INTERGENIC
SBS Chr9 1688824 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g009400
SBS Chr9 3104576 G-A Hetero INTERGENIC
SBS Chr9 8431938 C-T Hetero INTERGENIC
SBS Chr9 10150274 T-C Hetero INTERGENIC
SBS Chr9 10576529 G-A Hetero INTERGENIC
SBS Chr9 17837392 C-T Hetero UTR_3_PRIME
SBS Chr9 17837394 C-G Hetero UTR_3_PRIME
SBS Chr10 9829717 G-A Hetero INTERGENIC
SBS Chr10 17436689 C-A Hetero INTRON
SBS Chr11 18257856 A-T Hetero INTERGENIC
SBS Chr11 19168020 A-G Hetero INTERGENIC
SBS Chr11 24888464 T-C Hetero INTERGENIC
SBS Chr12 18338395 T-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4231454 4231580 126
Deletion Chr3 4875880 4875881 1 OsKitaake03g070200
Deletion Chr6 9997734 9997735 1
Deletion Chr6 10480781 10480799 18 OsKitaake06g118100
Deletion Chr5 13755903 13755904 1
Deletion Chr10 13965811 13965814 3
Deletion Chr5 15447051 15447059 8
Deletion Chr6 16703599 16703609 10 OsKitaake06g157703
Deletion Chr11 20168001 20182000 13999 OsKitaake11g157700
Deletion Chr12 22435829 22435833 4
Deletion Chr5 29569001 29715000 145999 23
Deletion Chr5 30021001 30046000 24999 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13778278 13778280 1
Insertion Chr4 2917658 2917660 1
Insertion Chr11 6167908 6167910 1
Insertion Chr11 12462747 12462749 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 5866518 6465659 2
Inversion Chr1 5883926 6465645 OsKitaake01g081600

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 3310415 Chr2 23033228
Translocation Chr10 5339948 Chr4 16746615
Translocation Chr10 5339955 Chr4 16744957
Translocation Chr10 16951896 Chr2 23062081 OsKitaake02g225600
Translocation Chr10 16961859 Chr2 23033228
Translocation Chr10 23073765 Chr4 16754648 OsKitaake04g082300
Translocation Chr10 23073769 Chr4 16752723 OsKitaake04g082300
Translocation Chr2 24388857 Chr1 5884446
Translocation Chr2 24388860 Chr1 5883928

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19795889	C-T	Hetero	INTERGENIC
SBS	Chr1	41167253	C-A	Hetero	INTERGENIC
SBS	Chr2	12490443	G-T	Hetero	INTERGENIC
SBS	Chr3	1919318	C-T	Hetero	INTERGENIC
SBS	Chr3	4166211	G-A	Hetero	INTERGENIC
SBS	Chr3	4285777	G-A	Hetero	INTERGENIC
SBS	Chr3	4488257	G-A	Hetero	INTRON
SBS	Chr3	5965060	C-A	Hetero	INTERGENIC
SBS	Chr3	6167447	T-G	Hetero	INTRON
SBS	Chr3	6584019	G-T	Hetero	INTERGENIC
SBS	Chr3	7699190	C-T	Homo	INTERGENIC
SBS	Chr3	9720702	C-T	Hetero	INTRON
SBS	Chr3	11573729	T-A	Hetero	INTERGENIC
SBS	Chr3	28456850	T-G	Hetero	INTRON
SBS	Chr3	30550493	C-T	Hetero	INTERGENIC
SBS	Chr3	30636560	A-G	Hetero	INTERGENIC
SBS	Chr3	36269566	T-C	Hetero	INTERGENIC
SBS	Chr4	1837361	T-A	Hetero	INTRON
SBS	Chr4	17049326	C-T	Hetero	INTERGENIC
SBS	Chr4	32838235	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	9542929	C-T	Homo	INTERGENIC
SBS	Chr6	15795158	C-G	Homo	INTERGENIC
SBS	Chr6	21712578	C-T	Hetero	INTERGENIC
SBS	Chr6	24342384	G-A	Hetero	INTERGENIC
SBS	Chr7	4084668	G-A	Hetero	INTERGENIC
SBS	Chr7	4084669	T-A	Hetero	INTERGENIC
SBS	Chr7	4084670	A-C	Hetero	INTERGENIC
SBS	Chr7	13678067	C-A	Hetero	INTERGENIC
SBS	Chr7	27105939	C-T	Hetero	INTERGENIC
SBS	Chr9	1688824	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g009400
SBS	Chr9	3104576	G-A	Hetero	INTERGENIC
SBS	Chr9	8431938	C-T	Hetero	INTERGENIC
SBS	Chr9	10150274	T-C	Hetero	INTERGENIC
SBS	Chr9	10576529	G-A	Hetero	INTERGENIC
SBS	Chr9	17837392	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	17837394	C-G	Hetero	UTR_3_PRIME
SBS	Chr10	9829717	G-A	Hetero	INTERGENIC
SBS	Chr10	17436689	C-A	Hetero	INTRON
SBS	Chr11	18257856	A-T	Hetero	INTERGENIC
SBS	Chr11	19168020	A-G	Hetero	INTERGENIC
SBS	Chr11	24888464	T-C	Hetero	INTERGENIC
SBS	Chr12	18338395	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4231454	4231580	126
Deletion	Chr3	4875880	4875881	1	OsKitaake03g070200
Deletion	Chr6	9997734	9997735	1
Deletion	Chr6	10480781	10480799	18	OsKitaake06g118100
Deletion	Chr5	13755903	13755904	1
Deletion	Chr10	13965811	13965814	3
Deletion	Chr5	15447051	15447059	8
Deletion	Chr6	16703599	16703609	10	OsKitaake06g157703
Deletion	Chr11	20168001	20182000	13999	OsKitaake11g157700
Deletion	Chr12	22435829	22435833	4
Deletion	Chr5	29569001	29715000	145999	23
Deletion	Chr5	30021001	30046000	24999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5866518	6465659	2
Inversion	Chr1	5883926	6465645	OsKitaake01g081600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes