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Mutant Information

Mutant Name	FN1579-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1579-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2924878 G-A Homo INTERGENIC
SBS Chr1 9821352 A-T Hetero INTERGENIC
SBS Chr1 9821353 A-T Hetero INTERGENIC
SBS Chr1 9821354 T-G Hetero INTERGENIC
SBS Chr1 10825827 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g133500
SBS Chr1 17699331 C-A Hetero INTERGENIC
SBS Chr1 37007145 C-T Homo INTERGENIC
SBS Chr2 1360320 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g020900
SBS Chr2 4905428 T-A Homo INTERGENIC
SBS Chr2 20341346 A-C Hetero INTRON
SBS Chr2 22452573 C-T Hetero INTRON
SBS Chr2 34727868 C-T Hetero INTRON
SBS Chr3 23037362 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 18103372 T-C Homo INTERGENIC
SBS Chr4 22222982 C-G Hetero INTERGENIC
SBS Chr5 24844685 G-C Hetero INTERGENIC
SBS Chr6 14526914 C-A Homo INTERGENIC
SBS Chr6 14526917 G-C Homo INTERGENIC
SBS Chr7 9735223 G-A Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 5201072 G-A Homo INTERGENIC
SBS Chr8 10141424 G-C Hetero INTERGENIC
SBS Chr10 11637281 G-A Hetero INTERGENIC
SBS Chr10 14672169 G-A Homo INTERGENIC
SBS Chr11 8583533 T-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 728429 728496 67
Deletion Chr4 1434001 1455000 20999 OsKitaake04g010500
Deletion Chr7 2499001 2517000 17999 2
Deletion Chr3 5156271 5156274 3
Deletion Chr11 6906001 6938000 31999 4
Deletion Chr6 12178499 12178500 1
Deletion Chr11 12463451 12463476 25
Deletion Chr12 12597001 12616000 18999 5
Deletion Chr12 13178001 13200000 21999 8
Deletion Chr8 13924848 13924849 1
Deletion Chr10 14009823 14009828 5
Deletion Chr4 14892001 14916000 23999
Deletion Chr5 15426733 15426735 2 OsKitaake05g118300
Deletion Chr3 16134541 16134549 8
Deletion Chr2 20411366 20411379 13
Deletion Chr6 22728151 22728154 3
Deletion Chr7 23450950 23450954 4
Deletion Chr8 27848110 27848112 2
Deletion Chr11 29135708 29135709 1 OsKitaake11g238800
Deletion Chr3 29711027 29711029 2
Deletion Chr1 37679352 37679359 7

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 4429682 4429686 3
Insertion Chr10 5135594 5135597 2
Insertion Chr12 15941367 15941369 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 11488064 Chr1 2911676 2
Translocation Chr2 11488075 Chr1 2911031 OsKitaake02g132900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2924878	G-A	Homo	INTERGENIC
SBS	Chr1	9821352	A-T	Hetero	INTERGENIC
SBS	Chr1	9821353	A-T	Hetero	INTERGENIC
SBS	Chr1	9821354	T-G	Hetero	INTERGENIC
SBS	Chr1	10825827	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g133500
SBS	Chr1	17699331	C-A	Hetero	INTERGENIC
SBS	Chr1	37007145	C-T	Homo	INTERGENIC
SBS	Chr2	1360320	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g020900
SBS	Chr2	4905428	T-A	Homo	INTERGENIC
SBS	Chr2	20341346	A-C	Hetero	INTRON
SBS	Chr2	22452573	C-T	Hetero	INTRON
SBS	Chr2	34727868	C-T	Hetero	INTRON
SBS	Chr3	23037362	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	18103372	T-C	Homo	INTERGENIC
SBS	Chr4	22222982	C-G	Hetero	INTERGENIC
SBS	Chr5	24844685	G-C	Hetero	INTERGENIC
SBS	Chr6	14526914	C-A	Homo	INTERGENIC
SBS	Chr6	14526917	G-C	Homo	INTERGENIC
SBS	Chr7	9735223	G-A	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	5201072	G-A	Homo	INTERGENIC
SBS	Chr8	10141424	G-C	Hetero	INTERGENIC
SBS	Chr10	11637281	G-A	Hetero	INTERGENIC
SBS	Chr10	14672169	G-A	Homo	INTERGENIC
SBS	Chr11	8583533	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	728429	728496	67
Deletion	Chr4	1434001	1455000	20999	OsKitaake04g010500
Deletion	Chr7	2499001	2517000	17999	2
Deletion	Chr3	5156271	5156274	3
Deletion	Chr11	6906001	6938000	31999	4
Deletion	Chr6	12178499	12178500	1
Deletion	Chr11	12463451	12463476	25
Deletion	Chr12	12597001	12616000	18999	5
Deletion	Chr12	13178001	13200000	21999	8
Deletion	Chr8	13924848	13924849	1
Deletion	Chr10	14009823	14009828	5
Deletion	Chr4	14892001	14916000	23999
Deletion	Chr5	15426733	15426735	2	OsKitaake05g118300
Deletion	Chr3	16134541	16134549	8
Deletion	Chr2	20411366	20411379	13
Deletion	Chr6	22728151	22728154	3
Deletion	Chr7	23450950	23450954	4
Deletion	Chr8	27848110	27848112	2
Deletion	Chr11	29135708	29135709	1	OsKitaake11g238800
Deletion	Chr3	29711027	29711029	2
Deletion	Chr1	37679352	37679359	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	11488064	Chr1	2911676	2
Translocation	Chr2	11488075	Chr1	2911031	OsKitaake02g132900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes