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Mutant Information

Mutant Name	FN1596-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1596-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 155262 T-A Hetero UTR_3_PRIME
SBS Chr1 2861255 C-T Hetero INTERGENIC
SBS Chr1 21485476 A-C Hetero INTERGENIC
SBS Chr1 39708460 G-A Hetero INTERGENIC
SBS Chr1 43475209 C-T Hetero INTERGENIC
SBS Chr1 44047743 C-T Hetero INTERGENIC
SBS Chr2 11809852 G-A Hetero INTRON
SBS Chr2 16489243 C-A Hetero INTERGENIC
SBS Chr3 25014997 G-T Hetero INTERGENIC
SBS Chr3 30320937 C-T Hetero INTERGENIC
SBS Chr3 33221680 C-T Hetero INTERGENIC
SBS Chr3 33855204 G-A Hetero INTRON
SBS Chr3 33855213 T-A Hetero INTRON
SBS Chr4 6561014 C-T Hetero INTERGENIC
SBS Chr4 14938382 C-T Hetero INTERGENIC
SBS Chr5 2986793 T-A Hetero UTR_3_PRIME
SBS Chr5 2986795 T-A Hetero UTR_3_PRIME
SBS Chr5 5154935 A-G Hetero INTRON
SBS Chr5 6292422 A-T Hetero INTERGENIC
SBS Chr5 8265579 C-T Hetero INTERGENIC
SBS Chr5 17085460 C-T Hetero INTRON
SBS Chr5 25494604 C-T Hetero INTRON
SBS Chr6 4306857 C-T Hetero INTERGENIC
SBS Chr7 11188854 C-T Hetero INTERGENIC
SBS Chr8 8111050 A-C Hetero INTERGENIC
SBS Chr9 1889969 T-A Hetero UTR_3_PRIME
SBS Chr9 11112661 C-A Hetero INTERGENIC
SBS Chr9 22683062 C-A Hetero INTERGENIC
SBS Chr10 13613045 C-T Hetero INTRON
SBS Chr11 9400858 C-T Hetero INTERGENIC
SBS Chr11 13098289 G-A Hetero INTERGENIC
SBS Chr11 17904152 A-G Hetero INTERGENIC
SBS Chr11 20039874 G-C Hetero INTERGENIC
SBS Chr11 22809599 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g180800
SBS Chr11 23909402 C-G Hetero INTERGENIC
SBS Chr12 20511119 G-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2649001 2694000 44999 6
Deletion Chr9 4839291 4839292 1 OsKitaake09g027400
Deletion Chr6 6979001 6993000 13999 OsKitaake06g090500
Deletion Chr1 8116863 8116916 53
Deletion Chr10 13487001 13511000 23999 4
Deletion Chr10 13557001 13615000 57999 6
Deletion Chr12 14192197 14192198 1
Deletion Chr10 15284001 15391000 106999 12
Deletion Chr2 18782136 18782143 7
Deletion Chr11 22817065 22817066 1
Deletion Chr7 24613162 24613163 1
Deletion Chr4 30948531 30948536 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 28729448 28729452 3
Insertion Chr5 12594783 12594785 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 2690029 3036154
Inversion Chr10 15151072 15284423 2
Inversion Chr10 15151076 15392907 2

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 3083071 Chr4 25340526
Translocation Chr10 3083281 Chr4 25340518
Translocation Chr10 3083287 Chr4 21711770
Translocation Chr10 3084113 Chr4 21711782
Translocation Chr10 3084116 Chr4 29611688 OsKitaake04g227400
Translocation Chr10 13489308 Chr4 29611688 2
Translocation Chr10 13612651 Chr4 29637432 2
Translocation Chr8 28960613 Chr1 30478260

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	155262	T-A	Hetero	UTR_3_PRIME
SBS	Chr1	2861255	C-T	Hetero	INTERGENIC
SBS	Chr1	21485476	A-C	Hetero	INTERGENIC
SBS	Chr1	39708460	G-A	Hetero	INTERGENIC
SBS	Chr1	43475209	C-T	Hetero	INTERGENIC
SBS	Chr1	44047743	C-T	Hetero	INTERGENIC
SBS	Chr2	11809852	G-A	Hetero	INTRON
SBS	Chr2	16489243	C-A	Hetero	INTERGENIC
SBS	Chr3	25014997	G-T	Hetero	INTERGENIC
SBS	Chr3	30320937	C-T	Hetero	INTERGENIC
SBS	Chr3	33221680	C-T	Hetero	INTERGENIC
SBS	Chr3	33855204	G-A	Hetero	INTRON
SBS	Chr3	33855213	T-A	Hetero	INTRON
SBS	Chr4	6561014	C-T	Hetero	INTERGENIC
SBS	Chr4	14938382	C-T	Hetero	INTERGENIC
SBS	Chr5	2986793	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	2986795	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	5154935	A-G	Hetero	INTRON
SBS	Chr5	6292422	A-T	Hetero	INTERGENIC
SBS	Chr5	8265579	C-T	Hetero	INTERGENIC
SBS	Chr5	17085460	C-T	Hetero	INTRON
SBS	Chr5	25494604	C-T	Hetero	INTRON
SBS	Chr6	4306857	C-T	Hetero	INTERGENIC
SBS	Chr7	11188854	C-T	Hetero	INTERGENIC
SBS	Chr8	8111050	A-C	Hetero	INTERGENIC
SBS	Chr9	1889969	T-A	Hetero	UTR_3_PRIME
SBS	Chr9	11112661	C-A	Hetero	INTERGENIC
SBS	Chr9	22683062	C-A	Hetero	INTERGENIC
SBS	Chr10	13613045	C-T	Hetero	INTRON
SBS	Chr11	9400858	C-T	Hetero	INTERGENIC
SBS	Chr11	13098289	G-A	Hetero	INTERGENIC
SBS	Chr11	17904152	A-G	Hetero	INTERGENIC
SBS	Chr11	20039874	G-C	Hetero	INTERGENIC
SBS	Chr11	22809599	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g180800
SBS	Chr11	23909402	C-G	Hetero	INTERGENIC
SBS	Chr12	20511119	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2649001	2694000	44999	6
Deletion	Chr9	4839291	4839292	1	OsKitaake09g027400
Deletion	Chr6	6979001	6993000	13999	OsKitaake06g090500
Deletion	Chr1	8116863	8116916	53
Deletion	Chr10	13487001	13511000	23999	4
Deletion	Chr10	13557001	13615000	57999	6
Deletion	Chr12	14192197	14192198	1
Deletion	Chr10	15284001	15391000	106999	12
Deletion	Chr2	18782136	18782143	7
Deletion	Chr11	22817065	22817066	1
Deletion	Chr7	24613162	24613163	1
Deletion	Chr4	30948531	30948536	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2690029	3036154
Inversion	Chr10	15151072	15284423	2
Inversion	Chr10	15151076	15392907	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes