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Mutant Information

Mutant Name	FN1624-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1624-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6706845 T-G Hetero INTERGENIC
SBS Chr1 43988552 T-A Hetero INTERGENIC
SBS Chr2 2846156 C-T Hetero INTERGENIC
SBS Chr2 3671755 C-T Hetero INTERGENIC
SBS Chr2 8794091 T-C Hetero INTERGENIC
SBS Chr2 31326068 C-A Homo INTERGENIC
SBS Chr3 7237464 G-A Hetero INTERGENIC
SBS Chr3 8864704 C-T Hetero INTRON
SBS Chr3 16768377 A-G Hetero INTERGENIC
SBS Chr3 16808909 A-C Hetero INTERGENIC
SBS Chr3 18445072 G-A Hetero INTRON
SBS Chr3 18827739 T-C Hetero INTERGENIC
SBS Chr3 20336314 T-G Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr3 33676793 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g362500
SBS Chr4 1553717 G-C Homo INTERGENIC
SBS Chr4 17802087 T-C Hetero INTERGENIC
SBS Chr5 7039861 C-T Hetero INTRON
SBS Chr5 7675257 A-G Hetero INTERGENIC
SBS Chr5 11502395 G-A Hetero INTERGENIC
SBS Chr5 24943687 T-G Homo INTERGENIC
SBS Chr6 11696426 C-T Homo INTERGENIC
SBS Chr6 22357878 C-A Homo INTERGENIC
SBS Chr7 5694970 A-G Hetero INTRON
SBS Chr7 8476191 A-G Homo SYNONYMOUS_CODING
SBS Chr7 12158364 C-T Homo INTERGENIC
SBS Chr7 16426575 C-T Hetero INTERGENIC
SBS Chr7 17555252 C-G Hetero INTERGENIC
SBS Chr7 20960816 G-A Hetero INTERGENIC
SBS Chr7 21309930 G-C Hetero INTERGENIC
SBS Chr7 26802485 G-A Hetero INTERGENIC
SBS Chr8 9852628 C-T Hetero INTERGENIC
SBS Chr8 11059115 G-A Hetero INTERGENIC
SBS Chr8 17055434 C-T Hetero INTERGENIC
SBS Chr8 17055435 C-T Hetero INTERGENIC
SBS Chr8 25667308 A-T Homo INTERGENIC
SBS Chr9 7900602 G-C Hetero INTERGENIC
SBS Chr10 6331331 G-C Hetero INTERGENIC
SBS Chr10 14566630 C-T Hetero INTERGENIC
SBS Chr10 18177216 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g128400
SBS Chr11 4324810 C-T Hetero INTERGENIC
SBS Chr11 23449464 T-A Hetero INTRON
SBS Chr11 29195543 C-A Homo INTERGENIC
SBS Chr11 29247785 G-C Homo INTERGENIC
SBS Chr12 13462232 C-T Hetero INTERGENIC
SBS Chr12 23592079 G-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2840122 2840124 2
Deletion Chr7 12606225 12606227 2
Deletion Chr3 16806314 16806318 4
Deletion Chr3 20050068 20050376 308
Deletion Chr5 22475119 22475120 1
Deletion Chr12 23669909 23669931 22 OsKitaake12g190100
Deletion Chr3 24526219 24526220 1
Deletion Chr1 33702312 33702313 1
Deletion Chr1 43906629 43906634 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17336410 17336413 2
Insertion Chr3 11614504 11614507 2
Insertion Chr5 14569030 14569033 2
Insertion Chr6 20553534 20553537 2
Insertion Chr4 23355941 23355944 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 29089163 Chr2 13949803
Translocation Chr8 29090070 Chr2 13949797

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6706845	T-G	Hetero	INTERGENIC
SBS	Chr1	43988552	T-A	Hetero	INTERGENIC
SBS	Chr2	2846156	C-T	Hetero	INTERGENIC
SBS	Chr2	3671755	C-T	Hetero	INTERGENIC
SBS	Chr2	8794091	T-C	Hetero	INTERGENIC
SBS	Chr2	31326068	C-A	Homo	INTERGENIC
SBS	Chr3	7237464	G-A	Hetero	INTERGENIC
SBS	Chr3	8864704	C-T	Hetero	INTRON
SBS	Chr3	16768377	A-G	Hetero	INTERGENIC
SBS	Chr3	16808909	A-C	Hetero	INTERGENIC
SBS	Chr3	18445072	G-A	Hetero	INTRON
SBS	Chr3	18827739	T-C	Hetero	INTERGENIC
SBS	Chr3	20336314	T-G	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr3	33676793	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g362500
SBS	Chr4	1553717	G-C	Homo	INTERGENIC
SBS	Chr4	17802087	T-C	Hetero	INTERGENIC
SBS	Chr5	7039861	C-T	Hetero	INTRON
SBS	Chr5	7675257	A-G	Hetero	INTERGENIC
SBS	Chr5	11502395	G-A	Hetero	INTERGENIC
SBS	Chr5	24943687	T-G	Homo	INTERGENIC
SBS	Chr6	11696426	C-T	Homo	INTERGENIC
SBS	Chr6	22357878	C-A	Homo	INTERGENIC
SBS	Chr7	5694970	A-G	Hetero	INTRON
SBS	Chr7	8476191	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	12158364	C-T	Homo	INTERGENIC
SBS	Chr7	16426575	C-T	Hetero	INTERGENIC
SBS	Chr7	17555252	C-G	Hetero	INTERGENIC
SBS	Chr7	20960816	G-A	Hetero	INTERGENIC
SBS	Chr7	21309930	G-C	Hetero	INTERGENIC
SBS	Chr7	26802485	G-A	Hetero	INTERGENIC
SBS	Chr8	9852628	C-T	Hetero	INTERGENIC
SBS	Chr8	11059115	G-A	Hetero	INTERGENIC
SBS	Chr8	17055434	C-T	Hetero	INTERGENIC
SBS	Chr8	17055435	C-T	Hetero	INTERGENIC
SBS	Chr8	25667308	A-T	Homo	INTERGENIC
SBS	Chr9	7900602	G-C	Hetero	INTERGENIC
SBS	Chr10	6331331	G-C	Hetero	INTERGENIC
SBS	Chr10	14566630	C-T	Hetero	INTERGENIC
SBS	Chr10	18177216	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g128400
SBS	Chr11	4324810	C-T	Hetero	INTERGENIC
SBS	Chr11	23449464	T-A	Hetero	INTRON
SBS	Chr11	29195543	C-A	Homo	INTERGENIC
SBS	Chr11	29247785	G-C	Homo	INTERGENIC
SBS	Chr12	13462232	C-T	Hetero	INTERGENIC
SBS	Chr12	23592079	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2840122	2840124	2
Deletion	Chr7	12606225	12606227	2
Deletion	Chr3	16806314	16806318	4
Deletion	Chr3	20050068	20050376	308
Deletion	Chr5	22475119	22475120	1
Deletion	Chr12	23669909	23669931	22	OsKitaake12g190100
Deletion	Chr3	24526219	24526220	1
Deletion	Chr1	33702312	33702313	1
Deletion	Chr1	43906629	43906634	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	29089163	Chr2	13949803
Translocation	Chr8	29090070	Chr2	13949797

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes