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Mutant Information

Mutant Name	FN1626-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1626-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6517013 G-A Hetero INTRON
SBS Chr1 17650810 C-T Hetero INTERGENIC
SBS Chr1 21203857 C-T Hetero INTERGENIC
SBS Chr1 23087328 C-T Hetero INTERGENIC
SBS Chr1 30267223 T-C Hetero INTERGENIC
SBS Chr1 43430331 G-C Homo INTERGENIC
SBS Chr1 44208754 C-T Hetero INTERGENIC
SBS Chr2 8232155 C-A Hetero INTERGENIC
SBS Chr2 18050125 C-T Hetero INTERGENIC
SBS Chr2 19542315 G-C Hetero INTERGENIC
SBS Chr2 23268077 C-A Hetero INTERGENIC
SBS Chr2 33169288 T-A Hetero INTERGENIC
SBS Chr3 6181164 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g088500
SBS Chr3 10699862 T-A Hetero INTERGENIC
SBS Chr4 4577641 T-A Hetero INTERGENIC
SBS Chr4 22858452 G-A Homo INTERGENIC
SBS Chr4 31234884 T-G Hetero INTERGENIC
SBS Chr5 3626629 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 11182849 G-T Hetero INTERGENIC
SBS Chr5 15163006 C-T Hetero INTERGENIC
SBS Chr5 20690061 C-T Hetero INTERGENIC
SBS Chr5 28073381 C-G Hetero INTERGENIC
SBS Chr6 22671258 G-A Homo INTERGENIC
SBS Chr6 27111968 A-C Hetero INTERGENIC
SBS Chr6 27669397 A-T Hetero INTERGENIC
SBS Chr7 22046770 G-A Homo INTERGENIC
SBS Chr7 26046405 G-A Hetero INTERGENIC
SBS Chr7 29437524 C-T Hetero INTERGENIC
SBS Chr8 1954619 A-G Hetero INTERGENIC
SBS Chr8 5279016 A-G Hetero INTERGENIC
SBS Chr8 10831521 G-C Hetero INTERGENIC
SBS Chr8 25946405 C-T Hetero INTERGENIC
SBS Chr8 25994449 C-T Hetero INTERGENIC
SBS Chr9 548858 C-T Hetero INTERGENIC
SBS Chr9 6256173 C-T Hetero INTERGENIC
SBS Chr9 13667792 T-C Hetero INTERGENIC
SBS Chr9 15261156 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g106700
SBS Chr9 18319096 G-A Homo INTERGENIC
SBS Chr9 18319097 G-A Homo INTERGENIC
SBS Chr10 612228 G-A Hetero INTERGENIC
SBS Chr10 978901 A-G Hetero INTERGENIC
SBS Chr10 1035501 C-T Hetero INTERGENIC
SBS Chr10 5870774 A-C Hetero INTRON
SBS Chr10 12940788 C-T Homo INTERGENIC
SBS Chr10 20467505 A-C Homo STOP_LOST OsKitaake10g156700
SBS Chr11 1362368 C-A Homo SYNONYMOUS_CODING
SBS Chr11 1362369 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g017300
SBS Chr11 10217581 A-G Homo UTR_3_PRIME
SBS Chr11 28379698 G-A Homo INTERGENIC
SBS Chr12 1154999 A-T Hetero UTR_3_PRIME
SBS Chr12 5170411 C-T Hetero SPLICE_SITE_REGION
SBS Chr12 6548406 G-A Hetero UTR_3_PRIME
SBS Chr12 7306480 T-G Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2460973 2460987 14 OsKitaake01g031200
Deletion Chr6 2600195 2600198 3
Deletion Chr2 2922284 2922301 17
Deletion Chr2 4770001 4856000 85999 10
Deletion Chr9 7541824 7541825 1
Deletion Chr1 10259495 10259502 7
Deletion Chr9 11738685 11738704 19
Deletion Chr11 12459798 12459799 1
Deletion Chr6 13424717 13424741 24
Deletion Chr9 13436001 13503000 66999 9
Deletion Chr3 14939949 14939950 1
Deletion Chr6 20070426 20070430 4
Deletion Chr7 25308875 25308877 2
Deletion Chr1 29718892 29718894 2 OsKitaake01g291800
Deletion Chr2 36929001 36960000 30999 3
Deletion Chr2 36963001 36990000 26999 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 23564632 23564635 2
Insertion Chr6 2385653 2385655 1
Insertion Chr11 18736078 18736082 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 836714 1423726 OsKitaake12g021400
Inversion Chr12 836744 1423728 OsKitaake12g021400
Inversion Chr8 19414533 19814989
Inversion Chr8 19414544 19815006
Inversion Chr6 25658225 25660937

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1927801 Chr1 41979412 OsKitaake11g026900
Translocation Chr11 1927972 Chr1 41979403 OsKitaake11g026900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6517013	G-A	Hetero	INTRON
SBS	Chr1	17650810	C-T	Hetero	INTERGENIC
SBS	Chr1	21203857	C-T	Hetero	INTERGENIC
SBS	Chr1	23087328	C-T	Hetero	INTERGENIC
SBS	Chr1	30267223	T-C	Hetero	INTERGENIC
SBS	Chr1	43430331	G-C	Homo	INTERGENIC
SBS	Chr1	44208754	C-T	Hetero	INTERGENIC
SBS	Chr2	8232155	C-A	Hetero	INTERGENIC
SBS	Chr2	18050125	C-T	Hetero	INTERGENIC
SBS	Chr2	19542315	G-C	Hetero	INTERGENIC
SBS	Chr2	23268077	C-A	Hetero	INTERGENIC
SBS	Chr2	33169288	T-A	Hetero	INTERGENIC
SBS	Chr3	6181164	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g088500
SBS	Chr3	10699862	T-A	Hetero	INTERGENIC
SBS	Chr4	4577641	T-A	Hetero	INTERGENIC
SBS	Chr4	22858452	G-A	Homo	INTERGENIC
SBS	Chr4	31234884	T-G	Hetero	INTERGENIC
SBS	Chr5	3626629	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	11182849	G-T	Hetero	INTERGENIC
SBS	Chr5	15163006	C-T	Hetero	INTERGENIC
SBS	Chr5	20690061	C-T	Hetero	INTERGENIC
SBS	Chr5	28073381	C-G	Hetero	INTERGENIC
SBS	Chr6	22671258	G-A	Homo	INTERGENIC
SBS	Chr6	27111968	A-C	Hetero	INTERGENIC
SBS	Chr6	27669397	A-T	Hetero	INTERGENIC
SBS	Chr7	22046770	G-A	Homo	INTERGENIC
SBS	Chr7	26046405	G-A	Hetero	INTERGENIC
SBS	Chr7	29437524	C-T	Hetero	INTERGENIC
SBS	Chr8	1954619	A-G	Hetero	INTERGENIC
SBS	Chr8	5279016	A-G	Hetero	INTERGENIC
SBS	Chr8	10831521	G-C	Hetero	INTERGENIC
SBS	Chr8	25946405	C-T	Hetero	INTERGENIC
SBS	Chr8	25994449	C-T	Hetero	INTERGENIC
SBS	Chr9	548858	C-T	Hetero	INTERGENIC
SBS	Chr9	6256173	C-T	Hetero	INTERGENIC
SBS	Chr9	13667792	T-C	Hetero	INTERGENIC
SBS	Chr9	15261156	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g106700
SBS	Chr9	18319096	G-A	Homo	INTERGENIC
SBS	Chr9	18319097	G-A	Homo	INTERGENIC
SBS	Chr10	612228	G-A	Hetero	INTERGENIC
SBS	Chr10	978901	A-G	Hetero	INTERGENIC
SBS	Chr10	1035501	C-T	Hetero	INTERGENIC
SBS	Chr10	5870774	A-C	Hetero	INTRON
SBS	Chr10	12940788	C-T	Homo	INTERGENIC
SBS	Chr10	20467505	A-C	Homo	STOP_LOST	OsKitaake10g156700
SBS	Chr11	1362368	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	1362369	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g017300
SBS	Chr11	10217581	A-G	Homo	UTR_3_PRIME
SBS	Chr11	28379698	G-A	Homo	INTERGENIC
SBS	Chr12	1154999	A-T	Hetero	UTR_3_PRIME
SBS	Chr12	5170411	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr12	6548406	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	7306480	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2460973	2460987	14	OsKitaake01g031200
Deletion	Chr6	2600195	2600198	3
Deletion	Chr2	2922284	2922301	17
Deletion	Chr2	4770001	4856000	85999	10
Deletion	Chr9	7541824	7541825	1
Deletion	Chr1	10259495	10259502	7
Deletion	Chr9	11738685	11738704	19
Deletion	Chr11	12459798	12459799	1
Deletion	Chr6	13424717	13424741	24
Deletion	Chr9	13436001	13503000	66999	9
Deletion	Chr3	14939949	14939950	1
Deletion	Chr6	20070426	20070430	4
Deletion	Chr7	25308875	25308877	2
Deletion	Chr1	29718892	29718894	2	OsKitaake01g291800
Deletion	Chr2	36929001	36960000	30999	3
Deletion	Chr2	36963001	36990000	26999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	836714	1423726	OsKitaake12g021400
Inversion	Chr12	836744	1423728	OsKitaake12g021400
Inversion	Chr8	19414533	19814989
Inversion	Chr8	19414544	19815006
Inversion	Chr6	25658225	25660937

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes