Search Kitaake

Mutant Information

Mutant Name	FN1627-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1627-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19562520 C-T Hetero INTERGENIC
SBS Chr1 20429398 G-A Hetero INTERGENIC
SBS Chr1 20429399 G-A Hetero INTERGENIC
SBS Chr1 20816345 C-T Hetero INTERGENIC
SBS Chr1 21273933 T-C Hetero INTERGENIC
SBS Chr1 26136238 C-A Homo INTERGENIC
SBS Chr1 37689088 T-G Hetero INTERGENIC
SBS Chr2 3652809 G-A Homo INTERGENIC
SBS Chr2 32074998 A-T Hetero INTERGENIC
SBS Chr3 7037145 G-A Hetero INTERGENIC
SBS Chr3 31853231 C-T Hetero INTRON
SBS Chr5 4842507 C-A Hetero INTERGENIC
SBS Chr5 8375072 C-A Homo INTERGENIC
SBS Chr5 8375073 T-A Homo INTERGENIC
SBS Chr5 10662920 G-A Homo INTERGENIC
SBS Chr5 21720108 A-G Hetero INTERGENIC
SBS Chr5 25234581 G-A Hetero INTERGENIC
SBS Chr5 25384862 T-C Hetero INTERGENIC
SBS Chr7 4841794 G-A Hetero INTERGENIC
SBS Chr7 8912424 C-T Hetero INTERGENIC
SBS Chr8 4167429 T-C Homo UTR_3_PRIME
SBS Chr8 7526148 A-T Hetero INTERGENIC
SBS Chr9 4716051 G-A Homo INTERGENIC
SBS Chr9 8513726 A-T Hetero INTERGENIC
SBS Chr9 15356143 G-T Hetero INTERGENIC
SBS Chr11 2377099 G-A Hetero INTERGENIC
SBS Chr11 14963765 C-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 5114288 5114434 146
Deletion Chr9 6480125 6480127 2
Deletion Chr2 6615479 6615482 3
Deletion Chr6 14920004 14920006 2
Deletion Chr9 16970215 16970216 1
Deletion Chr2 20550466 20550788 322
Deletion Chr3 20679001 20780000 100999 4
Deletion Chr8 21461617 21461619 2
Deletion Chr1 29427008 29427010 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 25911464 25911467 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 4044026 4837003 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 5866172 Chr6 21791963
Translocation Chr11 5866181 Chr6 21791962
Translocation Chr9 6998682 Chr3 22181978 2
Translocation Chr9 6998684 Chr3 22181979 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19562520	C-T	Hetero	INTERGENIC
SBS	Chr1	20429398	G-A	Hetero	INTERGENIC
SBS	Chr1	20429399	G-A	Hetero	INTERGENIC
SBS	Chr1	20816345	C-T	Hetero	INTERGENIC
SBS	Chr1	21273933	T-C	Hetero	INTERGENIC
SBS	Chr1	26136238	C-A	Homo	INTERGENIC
SBS	Chr1	37689088	T-G	Hetero	INTERGENIC
SBS	Chr2	3652809	G-A	Homo	INTERGENIC
SBS	Chr2	32074998	A-T	Hetero	INTERGENIC
SBS	Chr3	7037145	G-A	Hetero	INTERGENIC
SBS	Chr3	31853231	C-T	Hetero	INTRON
SBS	Chr5	4842507	C-A	Hetero	INTERGENIC
SBS	Chr5	8375072	C-A	Homo	INTERGENIC
SBS	Chr5	8375073	T-A	Homo	INTERGENIC
SBS	Chr5	10662920	G-A	Homo	INTERGENIC
SBS	Chr5	21720108	A-G	Hetero	INTERGENIC
SBS	Chr5	25234581	G-A	Hetero	INTERGENIC
SBS	Chr5	25384862	T-C	Hetero	INTERGENIC
SBS	Chr7	4841794	G-A	Hetero	INTERGENIC
SBS	Chr7	8912424	C-T	Hetero	INTERGENIC
SBS	Chr8	4167429	T-C	Homo	UTR_3_PRIME
SBS	Chr8	7526148	A-T	Hetero	INTERGENIC
SBS	Chr9	4716051	G-A	Homo	INTERGENIC
SBS	Chr9	8513726	A-T	Hetero	INTERGENIC
SBS	Chr9	15356143	G-T	Hetero	INTERGENIC
SBS	Chr11	2377099	G-A	Hetero	INTERGENIC
SBS	Chr11	14963765	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	5114288	5114434	146
Deletion	Chr9	6480125	6480127	2
Deletion	Chr2	6615479	6615482	3
Deletion	Chr6	14920004	14920006	2
Deletion	Chr9	16970215	16970216	1
Deletion	Chr2	20550466	20550788	322
Deletion	Chr3	20679001	20780000	100999	4
Deletion	Chr8	21461617	21461619	2
Deletion	Chr1	29427008	29427010	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4044026	4837003	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes