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Mutant Information

Mutant Name	FN1636-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1636-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19790458 T-G Hetero INTERGENIC
SBS Chr1 24861283 G-A Hetero INTERGENIC
SBS Chr1 27912517 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 33065032 C-G Hetero INTERGENIC
SBS Chr2 470034 A-C Homo NON_SYNONYMOUS_CODING OsKitaake02g006800
SBS Chr2 1608929 T-C Hetero INTERGENIC
SBS Chr2 3178171 G-C Hetero INTERGENIC
SBS Chr2 4905428 T-A Homo INTERGENIC
SBS Chr2 12760377 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g142600
SBS Chr2 18381817 G-C Hetero INTERGENIC
SBS Chr3 16064576 T-C Hetero INTERGENIC
SBS Chr3 17698873 G-A Hetero INTERGENIC
SBS Chr3 20561458 G-A Hetero INTERGENIC
SBS Chr4 1961429 T-A Hetero INTERGENIC
SBS Chr5 23588763 G-A Homo INTERGENIC
SBS Chr6 14703854 G-A Hetero INTERGENIC
SBS Chr7 24660721 A-T Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 5032352 T-C Hetero UTR_3_PRIME
SBS Chr8 8074369 G-A Hetero INTERGENIC
SBS Chr8 20188706 C-A Hetero INTERGENIC
SBS Chr9 8279362 A-T Homo INTERGENIC
SBS Chr9 10953881 C-T Homo INTERGENIC
SBS Chr9 10953882 G-T Homo INTERGENIC
SBS Chr9 19035436 C-T Hetero INTRON
SBS Chr9 21584547 G-A Homo UTR_5_PRIME
SBS Chr10 1990675 C-G Hetero INTERGENIC
SBS Chr10 2221441 G-A Hetero INTERGENIC
SBS Chr10 7562225 T-C Hetero INTERGENIC
SBS Chr10 8580283 C-A Homo INTERGENIC
SBS Chr11 8813531 G-A Hetero INTERGENIC
SBS Chr11 9930372 T-G Hetero INTERGENIC
SBS Chr11 10200429 G-A Hetero INTERGENIC
SBS Chr11 28768450 A-T Hetero INTERGENIC
SBS Chr12 12255712 C-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1404026 1404040 14 OsKitaake11g018100
Deletion Chr6 3034843 3034845 2
Deletion Chr8 5427706 5427709 3
Deletion Chr10 6228778 6228786 8 OsKitaake10g043600
Deletion Chr9 7962264 7962271 7
Deletion Chr6 10991274 10991276 2
Deletion Chr2 14394644 14394645 1
Deletion Chr6 15655237 15655238 1
Deletion Chr5 15717923 15717925 2
Deletion Chr12 19143887 19143903 16
Deletion Chr4 19368407 19368408 1 OsKitaake04g098700
Deletion Chr9 22773083 22773087 4
Deletion Chr11 24422001 24422003 2
Deletion Chr1 27408774 27408778 4
Deletion Chr3 31726001 31845000 118999 15
Deletion Chr3 32632741 32632746 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 33527434 33527437 2
Insertion Chr4 29716800 29716803 2
Insertion Chr6 6914993 6914995 1
Insertion Chr9 4260263 4260267 3

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 15905304 Chr1 18889000 2
Translocation Chr8 15905308 Chr1 18890595 2
Translocation Chr2 36225116 Chr1 11289315
Translocation Chr2 36225125 Chr1 11281501

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19790458	T-G	Hetero	INTERGENIC
SBS	Chr1	24861283	G-A	Hetero	INTERGENIC
SBS	Chr1	27912517	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	33065032	C-G	Hetero	INTERGENIC
SBS	Chr2	470034	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g006800
SBS	Chr2	1608929	T-C	Hetero	INTERGENIC
SBS	Chr2	3178171	G-C	Hetero	INTERGENIC
SBS	Chr2	4905428	T-A	Homo	INTERGENIC
SBS	Chr2	12760377	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g142600
SBS	Chr2	18381817	G-C	Hetero	INTERGENIC
SBS	Chr3	16064576	T-C	Hetero	INTERGENIC
SBS	Chr3	17698873	G-A	Hetero	INTERGENIC
SBS	Chr3	20561458	G-A	Hetero	INTERGENIC
SBS	Chr4	1961429	T-A	Hetero	INTERGENIC
SBS	Chr5	23588763	G-A	Homo	INTERGENIC
SBS	Chr6	14703854	G-A	Hetero	INTERGENIC
SBS	Chr7	24660721	A-T	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	5032352	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	8074369	G-A	Hetero	INTERGENIC
SBS	Chr8	20188706	C-A	Hetero	INTERGENIC
SBS	Chr9	8279362	A-T	Homo	INTERGENIC
SBS	Chr9	10953881	C-T	Homo	INTERGENIC
SBS	Chr9	10953882	G-T	Homo	INTERGENIC
SBS	Chr9	19035436	C-T	Hetero	INTRON
SBS	Chr9	21584547	G-A	Homo	UTR_5_PRIME
SBS	Chr10	1990675	C-G	Hetero	INTERGENIC
SBS	Chr10	2221441	G-A	Hetero	INTERGENIC
SBS	Chr10	7562225	T-C	Hetero	INTERGENIC
SBS	Chr10	8580283	C-A	Homo	INTERGENIC
SBS	Chr11	8813531	G-A	Hetero	INTERGENIC
SBS	Chr11	9930372	T-G	Hetero	INTERGENIC
SBS	Chr11	10200429	G-A	Hetero	INTERGENIC
SBS	Chr11	28768450	A-T	Hetero	INTERGENIC
SBS	Chr12	12255712	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1404026	1404040	14	OsKitaake11g018100
Deletion	Chr6	3034843	3034845	2
Deletion	Chr8	5427706	5427709	3
Deletion	Chr10	6228778	6228786	8	OsKitaake10g043600
Deletion	Chr9	7962264	7962271	7
Deletion	Chr6	10991274	10991276	2
Deletion	Chr2	14394644	14394645	1
Deletion	Chr6	15655237	15655238	1
Deletion	Chr5	15717923	15717925	2
Deletion	Chr12	19143887	19143903	16
Deletion	Chr4	19368407	19368408	1	OsKitaake04g098700
Deletion	Chr9	22773083	22773087	4
Deletion	Chr11	24422001	24422003	2
Deletion	Chr1	27408774	27408778	4
Deletion	Chr3	31726001	31845000	118999	15
Deletion	Chr3	32632741	32632746	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	15905304	Chr1	18889000	2
Translocation	Chr8	15905308	Chr1	18890595	2
Translocation	Chr2	36225116	Chr1	11289315
Translocation	Chr2	36225125	Chr1	11281501

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes