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Mutant Information

Mutant Name	FN1639-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1639-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20450279 G-A Homo INTERGENIC
SBS Chr1 20456239 C-G Hetero INTERGENIC
SBS Chr1 41680855 A-G Homo INTERGENIC
SBS Chr2 11106184 C-T Hetero INTERGENIC
SBS Chr3 25593604 A-G Hetero INTERGENIC
SBS Chr3 25594057 T-A Hetero INTERGENIC
SBS Chr3 31149347 C-A Hetero INTERGENIC
SBS Chr4 3726171 G-T Hetero INTERGENIC
SBS Chr4 9055384 C-T Hetero INTERGENIC
SBS Chr5 5664384 G-C Homo INTERGENIC
SBS Chr5 23104999 G-A Homo INTERGENIC
SBS Chr6 3664062 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g051000
SBS Chr6 8381112 A-C Homo INTERGENIC
SBS Chr6 13685100 A-G Hetero INTERGENIC
SBS Chr6 17567718 G-A Hetero INTERGENIC
SBS Chr6 22608379 A-C Hetero INTRON
SBS Chr8 9610587 C-T Hetero INTERGENIC
SBS Chr8 9610588 C-T Hetero INTERGENIC
SBS Chr8 10689662 C-T Hetero INTERGENIC
SBS Chr8 14468503 C-T Hetero INTERGENIC
SBS Chr8 17612772 G-A Hetero INTERGENIC
SBS Chr8 22266153 G-A Homo INTERGENIC
SBS Chr10 21389659 G-T Hetero INTERGENIC
SBS Chr11 26719678 C-A Hetero INTERGENIC
SBS Chr11 28912619 A-G Hetero INTERGENIC
SBS Chr11 29142242 T-A Hetero INTERGENIC
SBS Chr12 437318 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g005401
SBS Chr12 680410 A-T Hetero INTERGENIC
SBS Chr12 1475782 A-G Hetero INTRON
SBS Chr12 10575023 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 126363 126365 2
Deletion Chr8 359710 359713 3 OsKitaake08g005300
Deletion Chr5 1685454 1685457 3
Deletion Chr11 15197424 15197428 4
Deletion Chr11 15300448 15300452 4
Deletion Chr9 16846823 16846825 2
Deletion Chr3 18494643 18494650 7
Deletion Chr5 18801617 18801618 1
Deletion Chr8 22911591 22911597 6
Deletion Chr10 23399614 23399616 2
Deletion Chr2 26306130 26306135 5
Deletion Chr8 27990376 27990380 4
Deletion Chr1 37018720 37018731 11
Deletion Chr1 39137447 39137450 3

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14230011 14230014 2
Insertion Chr2 8641744 8641747 2
Insertion Chr4 25929371 25929374 2
Insertion Chr7 3458788 3458791 2
Insertion Chr9 8956513 8956515 1
Insertion Chr11 2511725 2511729 3
Insertion Chr11 26239827 26239830 2
Insertion Chr5 12402355 12402357 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20450279	G-A	Homo	INTERGENIC
SBS	Chr1	20456239	C-G	Hetero	INTERGENIC
SBS	Chr1	41680855	A-G	Homo	INTERGENIC
SBS	Chr2	11106184	C-T	Hetero	INTERGENIC
SBS	Chr3	25593604	A-G	Hetero	INTERGENIC
SBS	Chr3	25594057	T-A	Hetero	INTERGENIC
SBS	Chr3	31149347	C-A	Hetero	INTERGENIC
SBS	Chr4	3726171	G-T	Hetero	INTERGENIC
SBS	Chr4	9055384	C-T	Hetero	INTERGENIC
SBS	Chr5	5664384	G-C	Homo	INTERGENIC
SBS	Chr5	23104999	G-A	Homo	INTERGENIC
SBS	Chr6	3664062	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g051000
SBS	Chr6	8381112	A-C	Homo	INTERGENIC
SBS	Chr6	13685100	A-G	Hetero	INTERGENIC
SBS	Chr6	17567718	G-A	Hetero	INTERGENIC
SBS	Chr6	22608379	A-C	Hetero	INTRON
SBS	Chr8	9610587	C-T	Hetero	INTERGENIC
SBS	Chr8	9610588	C-T	Hetero	INTERGENIC
SBS	Chr8	10689662	C-T	Hetero	INTERGENIC
SBS	Chr8	14468503	C-T	Hetero	INTERGENIC
SBS	Chr8	17612772	G-A	Hetero	INTERGENIC
SBS	Chr8	22266153	G-A	Homo	INTERGENIC
SBS	Chr10	21389659	G-T	Hetero	INTERGENIC
SBS	Chr11	26719678	C-A	Hetero	INTERGENIC
SBS	Chr11	28912619	A-G	Hetero	INTERGENIC
SBS	Chr11	29142242	T-A	Hetero	INTERGENIC
SBS	Chr12	437318	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g005401
SBS	Chr12	680410	A-T	Hetero	INTERGENIC
SBS	Chr12	1475782	A-G	Hetero	INTRON
SBS	Chr12	10575023	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	126363	126365	2
Deletion	Chr8	359710	359713	3	OsKitaake08g005300
Deletion	Chr5	1685454	1685457	3
Deletion	Chr11	15197424	15197428	4
Deletion	Chr11	15300448	15300452	4
Deletion	Chr9	16846823	16846825	2
Deletion	Chr3	18494643	18494650	7
Deletion	Chr5	18801617	18801618	1
Deletion	Chr8	22911591	22911597	6
Deletion	Chr10	23399614	23399616	2
Deletion	Chr2	26306130	26306135	5
Deletion	Chr8	27990376	27990380	4
Deletion	Chr1	37018720	37018731	11
Deletion	Chr1	39137447	39137450	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes