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| Mutant Information |
|---|
| Mutant Name | FN1655-S [Download] |
| Generation | M2-SOS |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1655-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 16485339 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 26680142 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 24151660 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 24172611 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7409256 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 15923369 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33987958 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g283400 |
| SBS | Chr5 | 3365676 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 13541850 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16805467 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20051216 | C-A | Hetero | INTRON | |
| SBS | Chr6 | 20571158 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 17324220 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6710553 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7392145 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9793537 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 11303626 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 13017924 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13017926 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15892770 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18212230 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 6007078 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 7126473 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 15409716 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 2107352 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8816370 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 10699034 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 14948093 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 21215339 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g168000 |
| SBS | Chr12 | 3789549 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 22816670 | T-C | Hetero | INTRON |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 3514160 | 3514170 | 10 | |
| Deletion | Chr6 | 11452835 | 11452837 | 2 | |
| Deletion | Chr2 | 13818281 | 13818435 | 154 | |
| Deletion | Chr6 | 16083411 | 16083424 | 13 | OsKitaake06g154700 |
| Deletion | Chr1 | 17481791 | 17481794 | 3 | |
| Deletion | Chr1 | 21712793 | 21712805 | 12 | |
| Deletion | Chr4 | 22467339 | 22467340 | 1 | |
| Deletion | Chr3 | 26412536 | 26412537 | 1 | OsKitaake03g275600 |
| Deletion | Chr3 | 27585348 | 27585349 | 1 | |
| Deletion | Chr4 | 28155543 | 28155544 | 1 | |
| Deletion | Chr2 | 30840001 | 30946000 | 105999 | 18 |
| Deletion | Chr4 | 35988666 | 35988669 | 3 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 980052 | Chr5 | 12382293 | |
| Translocation | Chr8 | 980064 | Chr5 | 12382057 | |
| Translocation | Chr10 | 13574720 | Chr2 | 22277051 | OsKitaake10g081900 |
| Translocation | Chr6 | 29391927 | Chr2 | 34176369 | OsKitaake02g354700 |
| Translocation | Chr6 | 29391943 | Chr2 | 34176371 | OsKitaake02g354700 |