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Mutant Information

Mutant Name	FN1658-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1658-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17108787 A-C Hetero INTERGENIC
SBS Chr1 24112178 G-A Homo INTERGENIC
SBS Chr1 26127624 G-A Hetero INTRON
SBS Chr1 38315752 G-C Homo INTRON
SBS Chr1 39689608 G-T Homo INTRON
SBS Chr2 4242417 T-C Homo UTR_3_PRIME
SBS Chr2 15281111 G-T Hetero INTRON
SBS Chr2 17375135 A-G Hetero INTRON
SBS Chr2 18316973 C-G Hetero INTERGENIC
SBS Chr2 26767461 C-T Homo INTERGENIC
SBS Chr3 15447535 A-T Homo INTERGENIC
SBS Chr3 20423742 A-G Hetero INTERGENIC
SBS Chr3 21525503 G-A Homo INTERGENIC
SBS Chr3 22937127 T-A Homo INTERGENIC
SBS Chr3 31689971 T-A Hetero INTERGENIC
SBS Chr4 27982937 C-T Homo INTERGENIC
SBS Chr5 267096 T-C Homo INTERGENIC
SBS Chr5 4183508 G-C Homo INTERGENIC
SBS Chr5 11401378 G-C Hetero INTERGENIC
SBS Chr5 13486949 G-T Homo INTERGENIC
SBS Chr5 25732785 C-T Hetero INTERGENIC
SBS Chr6 14147873 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g146600
SBS Chr6 16565062 A-T Hetero INTERGENIC
SBS Chr6 23811441 A-G Hetero INTERGENIC
SBS Chr7 15042735 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g125900
SBS Chr7 18946025 G-A Homo INTERGENIC
SBS Chr7 18946027 C-A Homo INTERGENIC
SBS Chr7 21995582 C-T Homo INTERGENIC
SBS Chr8 1360394 G-T Homo INTERGENIC
SBS Chr8 7330915 G-A Homo INTERGENIC
SBS Chr8 12239445 C-G Homo INTERGENIC
SBS Chr9 5399641 G-T Hetero INTRON
SBS Chr9 12900348 G-T Hetero INTERGENIC
SBS Chr10 2615525 C-A Hetero INTRON
SBS Chr10 2615526 G-A Hetero INTRON
SBS Chr10 11161059 T-A Homo INTERGENIC
SBS Chr10 18053160 G-A Hetero INTERGENIC
SBS Chr10 19568984 G-A Homo SYNONYMOUS_CODING
SBS Chr10 19976657 T-C Homo UTR_3_PRIME
SBS Chr10 20426242 T-A Homo INTERGENIC
SBS Chr11 2628470 G-A Homo INTERGENIC
SBS Chr11 11766903 C-A Hetero INTERGENIC
SBS Chr11 11796137 G-A Homo INTERGENIC
SBS Chr12 12980486 C-A Hetero INTERGENIC
SBS Chr12 23674109 T-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 4530076 4530090 14
Deletion Chr5 4549072 4549079 7
Deletion Chr8 4831893 4831895 2
Deletion Chr10 9601178 9601182 4
Deletion Chr7 10146280 10146281 1 OsKitaake07g099900
Deletion Chr12 10935973 10935976 3
Deletion Chr5 13870598 13870599 1
Deletion Chr3 15710604 15710612 8 OsKitaake03g201500
Deletion Chr4 19431001 19447000 15999 OsKitaake04g099601
Deletion Chr10 20406846 20406860 14
Deletion Chr11 28896924 28896991 67
Deletion Chr2 36512741 36512755 14
Deletion Chr1 39558667 39558668 1 OsKitaake01g427300
Deletion Chr1 40049498 40049514 16

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 2563748 2563751 2
Insertion Chr12 22269285 22269288 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 822636 1296565
Inversion Chr6 822643 1296572

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 648080 Chr7 28977347 OsKitaake07g276700
Translocation Chr8 650496 Chr7 28977338 OsKitaake07g276700
Translocation Chr8 650509 Chr3 15630761
Translocation Chr8 659031 Chr3 15629994 OsKitaake08g009300
Translocation Chr10 13161156 Chr8 13883611

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17108787	A-C	Hetero	INTERGENIC
SBS	Chr1	24112178	G-A	Homo	INTERGENIC
SBS	Chr1	26127624	G-A	Hetero	INTRON
SBS	Chr1	38315752	G-C	Homo	INTRON
SBS	Chr1	39689608	G-T	Homo	INTRON
SBS	Chr2	4242417	T-C	Homo	UTR_3_PRIME
SBS	Chr2	15281111	G-T	Hetero	INTRON
SBS	Chr2	17375135	A-G	Hetero	INTRON
SBS	Chr2	18316973	C-G	Hetero	INTERGENIC
SBS	Chr2	26767461	C-T	Homo	INTERGENIC
SBS	Chr3	15447535	A-T	Homo	INTERGENIC
SBS	Chr3	20423742	A-G	Hetero	INTERGENIC
SBS	Chr3	21525503	G-A	Homo	INTERGENIC
SBS	Chr3	22937127	T-A	Homo	INTERGENIC
SBS	Chr3	31689971	T-A	Hetero	INTERGENIC
SBS	Chr4	27982937	C-T	Homo	INTERGENIC
SBS	Chr5	267096	T-C	Homo	INTERGENIC
SBS	Chr5	4183508	G-C	Homo	INTERGENIC
SBS	Chr5	11401378	G-C	Hetero	INTERGENIC
SBS	Chr5	13486949	G-T	Homo	INTERGENIC
SBS	Chr5	25732785	C-T	Hetero	INTERGENIC
SBS	Chr6	14147873	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g146600
SBS	Chr6	16565062	A-T	Hetero	INTERGENIC
SBS	Chr6	23811441	A-G	Hetero	INTERGENIC
SBS	Chr7	15042735	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g125900
SBS	Chr7	18946025	G-A	Homo	INTERGENIC
SBS	Chr7	18946027	C-A	Homo	INTERGENIC
SBS	Chr7	21995582	C-T	Homo	INTERGENIC
SBS	Chr8	1360394	G-T	Homo	INTERGENIC
SBS	Chr8	7330915	G-A	Homo	INTERGENIC
SBS	Chr8	12239445	C-G	Homo	INTERGENIC
SBS	Chr9	5399641	G-T	Hetero	INTRON
SBS	Chr9	12900348	G-T	Hetero	INTERGENIC
SBS	Chr10	2615525	C-A	Hetero	INTRON
SBS	Chr10	2615526	G-A	Hetero	INTRON
SBS	Chr10	11161059	T-A	Homo	INTERGENIC
SBS	Chr10	18053160	G-A	Hetero	INTERGENIC
SBS	Chr10	19568984	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	19976657	T-C	Homo	UTR_3_PRIME
SBS	Chr10	20426242	T-A	Homo	INTERGENIC
SBS	Chr11	2628470	G-A	Homo	INTERGENIC
SBS	Chr11	11766903	C-A	Hetero	INTERGENIC
SBS	Chr11	11796137	G-A	Homo	INTERGENIC
SBS	Chr12	12980486	C-A	Hetero	INTERGENIC
SBS	Chr12	23674109	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	4530076	4530090	14
Deletion	Chr5	4549072	4549079	7
Deletion	Chr8	4831893	4831895	2
Deletion	Chr10	9601178	9601182	4
Deletion	Chr7	10146280	10146281	1	OsKitaake07g099900
Deletion	Chr12	10935973	10935976	3
Deletion	Chr5	13870598	13870599	1
Deletion	Chr3	15710604	15710612	8	OsKitaake03g201500
Deletion	Chr4	19431001	19447000	15999	OsKitaake04g099601
Deletion	Chr10	20406846	20406860	14
Deletion	Chr11	28896924	28896991	67
Deletion	Chr2	36512741	36512755	14
Deletion	Chr1	39558667	39558668	1	OsKitaake01g427300
Deletion	Chr1	40049498	40049514	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	822636	1296565
Inversion	Chr6	822643	1296572

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes