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Mutant Information |
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Mutant Name | FN185-2_3_4 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN185-2_3_4 Alignment File |
Seed Availability | No |
Variant Information |
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Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 7000218 | C-T | Hetero | INTERGENIC | |
SBS | Chr2 | 8267010 | C-A | Hetero | INTERGENIC | |
SBS | Chr2 | 9384221 | T-C | Hetero | INTERGENIC | |
SBS | Chr2 | 12847354 | C-T | Hetero | INTRON | |
SBS | Chr2 | 17928530 | G-A | Hetero | INTERGENIC | |
SBS | Chr2 | 27662870 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g277800 |
SBS | Chr3 | 13267689 | C-A | Hetero | INTERGENIC | |
SBS | Chr4 | 11553919 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 12400884 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 14626545 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 19598664 | C-T | Hetero | INTERGENIC | |
SBS | Chr5 | 25266825 | C-A | Hetero | INTERGENIC | |
SBS | Chr5 | 25266826 | C-A | Hetero | INTERGENIC | |
SBS | Chr6 | 2137697 | T-C | Hetero | INTRON | |
SBS | Chr7 | 3854189 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 12896586 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 25507571 | G-T | Homo | INTERGENIC | |
SBS | Chr8 | 8790642 | A-C | Hetero | INTERGENIC | |
SBS | Chr8 | 23839378 | G-C | Hetero | INTERGENIC | |
SBS | Chr9 | 10646744 | G-A | Hetero | INTERGENIC | |
SBS | Chr9 | 13405465 | T-C | Hetero | INTERGENIC | |
SBS | Chr10 | 8495844 | C-T | Hetero | INTERGENIC | |
SBS | Chr10 | 8595333 | T-C | Hetero | INTERGENIC | |
SBS | Chr10 | 17058455 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 5894870 | C-G | Hetero | INTERGENIC | |
SBS | Chr12 | 9011997 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g089700 |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr7 | 470935 | 470946 | 11 | |
Deletion | Chr8 | 3498328 | 3498329 | 1 | |
Deletion | Chr1 | 4544013 | 4544021 | 8 | |
Deletion | Chr2 | 8033556 | 8033565 | 9 | |
Deletion | Chr3 | 11435069 | 11435071 | 2 | |
Deletion | Chr7 | 12417588 | 12417590 | 2 | OsKitaake07g111000 |
Deletion | Chr9 | 17077341 | 17077353 | 12 | |
Deletion | Chr12 | 18704641 | 18704642 | 1 | OsKitaake12g138200 |
Deletion | Chr10 | 19251708 | 19251709 | 1 | |
Deletion | Chr5 | 24607245 | 24607246 | 1 | |
Deletion | Chr8 | 26284810 | 26284822 | 12 | |
Deletion | Chr3 | 28944102 | 28944104 | 2 | |
Deletion | Chr7 | 29598883 | 29598885 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr11 | 3971987 | 3971991 | 3 | |
Insertion | Chr2 | 36579018 | 36579020 | 1 | OsKitaake02g389100 ![]() |
Insertion | Chr5 | 12965974 | 12965976 | 1 | OsKitaake05g100400 ![]() |
Insertion | Chr5 | 30230376 | 30230384 | 7 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr3 | 7321189 | 7941532 | OsKitaake03g102200 |
Inversion | Chr3 | 7941538 | 7974274 | |
Inversion | Chr6 | 18354665 | 18895959 | OsKitaake06g168100 |
Inversion | Chr6 | 18382646 | 18895957 | OsKitaake06g168100 |
Inversion | Chr4 | 30910079 | 30956370 | OsKitaake04g240700 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr6 | 20577991 | Chr5 | 23866986 | OsKitaake05g209800 |
Translocation | Chr6 | 20582881 | Chr5 | 23835772 | |
Translocation | Chr4 | 22251168 | Chr1 | 36868716 | |
Translocation | Chr4 | 22257274 | Chr1 | 36868731 | |
Translocation | Chr12 | 24603198 | Chr4 | 30984666 | OsKitaake12g199400 |
Translocation | Chr12 | 24603797 | Chr4 | 30910086 | OsKitaake12g199400 |