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Mutant Information 

Mutant NameFN185-2_3_4  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN185-2_3_4 Alignment File
Seed Availability No


Variant Information 

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr17000218C-THeteroINTERGENIC
SBS  Chr28267010C-AHeteroINTERGENIC
SBS  Chr29384221T-CHeteroINTERGENIC
SBS  Chr212847354C-THeteroINTRON
SBS  Chr217928530G-AHeteroINTERGENIC
SBS  Chr227662870T-AHeteroNON_SYNONYMOUS_CODINGOsKitaake02g277800
SBS  Chr313267689C-AHeteroINTERGENIC
SBS  Chr411553919G-AHeteroINTERGENIC
SBS  Chr412400884G-AHeteroINTERGENIC
SBS  Chr414626545G-AHeteroINTERGENIC
SBS  Chr419598664C-THeteroINTERGENIC
SBS  Chr525266825C-AHeteroINTERGENIC
SBS  Chr525266826C-AHeteroINTERGENIC
SBS  Chr62137697T-CHeteroINTRON
SBS  Chr73854189G-AHeteroINTERGENIC
SBS  Chr712896586G-AHeteroINTERGENIC
SBS  Chr725507571G-THomoINTERGENIC
SBS  Chr88790642A-CHeteroINTERGENIC
SBS  Chr823839378G-CHeteroINTERGENIC
SBS  Chr910646744G-AHeteroINTERGENIC
SBS  Chr913405465T-CHeteroINTERGENIC
SBS  Chr108495844C-THeteroINTERGENIC
SBS  Chr108595333T-CHeteroINTERGENIC
SBS  Chr1017058455G-AHeteroINTERGENIC
SBS  Chr125894870C-GHeteroINTERGENIC
SBS  Chr129011997G-AHeteroNON_SYNONYMOUS_CODINGOsKitaake12g089700

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr747093547094611
Deletion  Chr8349832834983291
Deletion  Chr1454401345440218
Deletion  Chr2803355680335659
Deletion  Chr311435069114350712
Deletion  Chr712417588124175902OsKitaake07g111000
Deletion  Chr9170773411707735312
Deletion  Chr1218704641187046421OsKitaake12g138200
Deletion  Chr1019251708192517091
Deletion  Chr524607245246072461
Deletion  Chr8262848102628482212
Deletion  Chr328944102289441042
Deletion  Chr729598883295988852

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr11397198739719913
Insertion  Chr236579018365790201OsKitaake02g389100 image
Insertion  Chr512965974129659761OsKitaake05g100400 image
Insertion  Chr530230376302303847

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr373211897941532OsKitaake03g102200
Inversion  Chr379415387974274
Inversion  Chr61835466518895959OsKitaake06g168100
Inversion  Chr61838264618895957OsKitaake06g168100
Inversion  Chr43091007930956370OsKitaake04g240700

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr620577991Chr523866986OsKitaake05g209800
Translocation  Chr620582881Chr523835772
Translocation  Chr422251168Chr136868716
Translocation  Chr422257274Chr136868731
Translocation  Chr1224603198Chr430984666OsKitaake12g199400
Translocation  Chr1224603797Chr430910086OsKitaake12g199400