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Mutant Information

Mutant Name	FN1916 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1916 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8080549 C-T Hetero INTERGENIC
SBS Chr1 36796234 C-T Hetero INTERGENIC
SBS Chr2 549987 G-T Hetero INTERGENIC
SBS Chr2 21771631 G-A Homo INTERGENIC
SBS Chr2 26515030 A-C Hetero INTERGENIC
SBS Chr2 36782266 G-T Homo NON_SYNONYMOUS_CODING OsKitaake02g392800
SBS Chr3 2864827 G-A Homo INTERGENIC
SBS Chr3 2864828 G-A Homo INTERGENIC
SBS Chr3 2864831 G-C Homo INTERGENIC
SBS Chr3 11081046 A-G Homo INTRON
SBS Chr3 33202904 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g354700
SBS Chr4 5865586 T-A Hetero INTERGENIC
SBS Chr4 6832914 C-A Hetero INTERGENIC
SBS Chr4 8021094 G-A Hetero INTERGENIC
SBS Chr4 8123536 G-A Homo INTERGENIC
SBS Chr4 14707744 G-A Hetero INTERGENIC
SBS Chr4 15414244 C-T Homo INTERGENIC
SBS Chr4 32683137 T-A Homo INTERGENIC
SBS Chr5 4347487 C-T Homo INTERGENIC
SBS Chr5 6488036 T-A Hetero INTERGENIC
SBS Chr5 13401855 C-T Hetero INTERGENIC
SBS Chr5 25889097 T-C Hetero INTERGENIC
SBS Chr6 11795439 C-T Hetero INTERGENIC
SBS Chr6 20635009 G-C Hetero INTERGENIC
SBS Chr7 8090867 G-A Homo INTERGENIC
SBS Chr8 13241334 A-G Hetero INTERGENIC
SBS Chr8 14460644 A-G Hetero INTERGENIC
SBS Chr8 15972878 G-A Hetero INTERGENIC
SBS Chr8 16922287 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g128500
SBS Chr9 902140 C-A Homo INTERGENIC
SBS Chr9 19991765 C-T Homo INTRON
SBS Chr11 5913176 C-A Hetero UTR_3_PRIME
SBS Chr12 9990521 C-A Homo INTERGENIC
SBS Chr12 9990522 C-A Homo INTERGENIC
SBS Chr12 9990523 C-T Homo INTERGENIC
SBS Chr12 10696391 C-T Homo INTERGENIC
SBS Chr12 26485126 T-A Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 902126 902128 2
Deletion Chr2 1572001 1582000 9999 3
Deletion Chr8 3277530 3277548 18
Deletion Chr3 4702001 4753000 50999 6
Deletion Chr4 6363420 6363422 2
Deletion Chr5 9684013 9684027 14
Deletion Chr11 11196903 11196904 1
Deletion Chr11 11903493 11903496 3
Deletion Chr4 16601001 16726000 124999 13
Deletion Chr4 20941786 20941801 15 OsKitaake04g114600
Deletion Chr7 21120964 21120976 12
Deletion Chr10 22003570 22003579 9
Deletion Chr6 24010895 24010897 2
Deletion Chr5 24787478 24787487 9
Deletion Chr8 24978436 24978448 12
Deletion Chr1 27979973 27979977 4
Deletion Chr8 28961491 28961492 1
Deletion Chr1 30112798 30112802 4
Deletion Chr2 30633269 30633281 12
Deletion Chr3 31561177 31561192 15
Deletion Chr4 35956600 35956611 11

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3973386 3973389 2
Insertion Chr1 20793812 20793815 2
Insertion Chr1 21531615 21531618 2
Insertion Chr4 22576228 22576231 2
Insertion Chr8 10980169 10980172 2
Insertion Chr9 17998026 17998029 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16601235 17473957 OsKitaake04g081200
Inversion Chr4 16722894 17473964 OsKitaake04g082200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8080549	C-T	Hetero	INTERGENIC
SBS	Chr1	36796234	C-T	Hetero	INTERGENIC
SBS	Chr2	549987	G-T	Hetero	INTERGENIC
SBS	Chr2	21771631	G-A	Homo	INTERGENIC
SBS	Chr2	26515030	A-C	Hetero	INTERGENIC
SBS	Chr2	36782266	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g392800
SBS	Chr3	2864827	G-A	Homo	INTERGENIC
SBS	Chr3	2864828	G-A	Homo	INTERGENIC
SBS	Chr3	2864831	G-C	Homo	INTERGENIC
SBS	Chr3	11081046	A-G	Homo	INTRON
SBS	Chr3	33202904	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g354700
SBS	Chr4	5865586	T-A	Hetero	INTERGENIC
SBS	Chr4	6832914	C-A	Hetero	INTERGENIC
SBS	Chr4	8021094	G-A	Hetero	INTERGENIC
SBS	Chr4	8123536	G-A	Homo	INTERGENIC
SBS	Chr4	14707744	G-A	Hetero	INTERGENIC
SBS	Chr4	15414244	C-T	Homo	INTERGENIC
SBS	Chr4	32683137	T-A	Homo	INTERGENIC
SBS	Chr5	4347487	C-T	Homo	INTERGENIC
SBS	Chr5	6488036	T-A	Hetero	INTERGENIC
SBS	Chr5	13401855	C-T	Hetero	INTERGENIC
SBS	Chr5	25889097	T-C	Hetero	INTERGENIC
SBS	Chr6	11795439	C-T	Hetero	INTERGENIC
SBS	Chr6	20635009	G-C	Hetero	INTERGENIC
SBS	Chr7	8090867	G-A	Homo	INTERGENIC
SBS	Chr8	13241334	A-G	Hetero	INTERGENIC
SBS	Chr8	14460644	A-G	Hetero	INTERGENIC
SBS	Chr8	15972878	G-A	Hetero	INTERGENIC
SBS	Chr8	16922287	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g128500
SBS	Chr9	902140	C-A	Homo	INTERGENIC
SBS	Chr9	19991765	C-T	Homo	INTRON
SBS	Chr11	5913176	C-A	Hetero	UTR_3_PRIME
SBS	Chr12	9990521	C-A	Homo	INTERGENIC
SBS	Chr12	9990522	C-A	Homo	INTERGENIC
SBS	Chr12	9990523	C-T	Homo	INTERGENIC
SBS	Chr12	10696391	C-T	Homo	INTERGENIC
SBS	Chr12	26485126	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	902126	902128	2
Deletion	Chr2	1572001	1582000	9999	3
Deletion	Chr8	3277530	3277548	18
Deletion	Chr3	4702001	4753000	50999	6
Deletion	Chr4	6363420	6363422	2
Deletion	Chr5	9684013	9684027	14
Deletion	Chr11	11196903	11196904	1
Deletion	Chr11	11903493	11903496	3
Deletion	Chr4	16601001	16726000	124999	13
Deletion	Chr4	20941786	20941801	15	OsKitaake04g114600
Deletion	Chr7	21120964	21120976	12
Deletion	Chr10	22003570	22003579	9
Deletion	Chr6	24010895	24010897	2
Deletion	Chr5	24787478	24787487	9
Deletion	Chr8	24978436	24978448	12
Deletion	Chr1	27979973	27979977	4
Deletion	Chr8	28961491	28961492	1
Deletion	Chr1	30112798	30112802	4
Deletion	Chr2	30633269	30633281	12
Deletion	Chr3	31561177	31561192	15
Deletion	Chr4	35956600	35956611	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16601235	17473957	OsKitaake04g081200
Inversion	Chr4	16722894	17473964	OsKitaake04g082200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes