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Mutant Information

Mutant Name	FN1981-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1981-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22403212 G-A Homo INTERGENIC
SBS Chr2 21288818 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g205300
SBS Chr2 24347157 C-T Hetero INTRON
SBS Chr2 34552792 A-C Homo INTERGENIC
SBS Chr3 16752567 C-T Hetero INTERGENIC
SBS Chr3 17645877 C-T Hetero INTERGENIC
SBS Chr3 21686267 T-C Hetero INTERGENIC
SBS Chr3 26222520 C-T Homo INTERGENIC
SBS Chr4 11791108 G-A Hetero INTERGENIC
SBS Chr4 29748711 G-T Hetero INTERGENIC
SBS Chr5 3453761 G-C Homo INTRON
SBS Chr5 5559590 A-G Homo INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr5 27492201 T-C Homo INTERGENIC
SBS Chr6 17333709 G-T Hetero INTERGENIC
SBS Chr7 2483396 C-T Hetero INTERGENIC
SBS Chr7 6578347 T-G Hetero INTERGENIC
SBS Chr7 14905396 G-A Hetero INTERGENIC
SBS Chr8 22985948 T-A Hetero INTERGENIC
SBS Chr9 9677192 C-T Hetero INTERGENIC
SBS Chr9 12313953 A-G Hetero INTERGENIC
SBS Chr9 12313954 C-T Hetero INTERGENIC
SBS Chr9 12313955 T-G Hetero INTERGENIC
SBS Chr9 17830349 G-A Hetero INTERGENIC
SBS Chr10 10170173 T-A Hetero INTERGENIC
SBS Chr10 18870699 C-T Hetero INTERGENIC
SBS Chr11 10022250 A-G Hetero INTERGENIC
SBS Chr11 25464897 A-T Homo INTERGENIC
SBS Chr12 1803134 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g026900
SBS Chr12 2734358 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g040400
SBS Chr12 4510935 T-A Hetero INTERGENIC
SBS Chr12 19826149 C-T Hetero INTERGENIC
SBS Chr12 26468113 T-A Hetero INTERGENIC
SBS Chr12 26468114 C-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1885617 1885637 20
Deletion Chr11 2621144 2621145 1
Deletion Chr5 6115663 6115668 5
Deletion Chr5 6802323 6802326 3
Deletion Chr11 8772001 9001000 228999 9
Deletion Chr4 11475097 11475099 2
Deletion Chr5 13478114 13478115 1
Deletion Chr1 17189332 17189497 165
Deletion Chr4 17722892 17722893 1
Deletion Chr1 18156001 18161000 4999
Deletion Chr2 18287423 18287424 1
Deletion Chr5 19110927 19110943 16
Deletion Chr5 19299864 19299865 1
Deletion Chr6 20123323 20123324 1
Deletion Chr6 21488030 21488033 3
Deletion Chr7 25943001 25947000 3999 OsKitaake07g237100
Deletion Chr5 30258420 30258421 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 609317 609320 2
Insertion Chr9 15923319 15923322 2
Insertion Chr12 24345305 24345308 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 18154946 18155411
Inversion Chr1 18154953 18161134
Inversion Chr1 33927433 34704917 OsKitaake01g348800
Inversion Chr1 33927434 34704923 OsKitaake01g348800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2711169 Chr6 9349938
Translocation Chr12 2711174 Chr6 9354698

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22403212	G-A	Homo	INTERGENIC
SBS	Chr2	21288818	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g205300
SBS	Chr2	24347157	C-T	Hetero	INTRON
SBS	Chr2	34552792	A-C	Homo	INTERGENIC
SBS	Chr3	16752567	C-T	Hetero	INTERGENIC
SBS	Chr3	17645877	C-T	Hetero	INTERGENIC
SBS	Chr3	21686267	T-C	Hetero	INTERGENIC
SBS	Chr3	26222520	C-T	Homo	INTERGENIC
SBS	Chr4	11791108	G-A	Hetero	INTERGENIC
SBS	Chr4	29748711	G-T	Hetero	INTERGENIC
SBS	Chr5	3453761	G-C	Homo	INTRON
SBS	Chr5	5559590	A-G	Homo	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	27492201	T-C	Homo	INTERGENIC
SBS	Chr6	17333709	G-T	Hetero	INTERGENIC
SBS	Chr7	2483396	C-T	Hetero	INTERGENIC
SBS	Chr7	6578347	T-G	Hetero	INTERGENIC
SBS	Chr7	14905396	G-A	Hetero	INTERGENIC
SBS	Chr8	22985948	T-A	Hetero	INTERGENIC
SBS	Chr9	9677192	C-T	Hetero	INTERGENIC
SBS	Chr9	12313953	A-G	Hetero	INTERGENIC
SBS	Chr9	12313954	C-T	Hetero	INTERGENIC
SBS	Chr9	12313955	T-G	Hetero	INTERGENIC
SBS	Chr9	17830349	G-A	Hetero	INTERGENIC
SBS	Chr10	10170173	T-A	Hetero	INTERGENIC
SBS	Chr10	18870699	C-T	Hetero	INTERGENIC
SBS	Chr11	10022250	A-G	Hetero	INTERGENIC
SBS	Chr11	25464897	A-T	Homo	INTERGENIC
SBS	Chr12	1803134	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g026900
SBS	Chr12	2734358	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g040400
SBS	Chr12	4510935	T-A	Hetero	INTERGENIC
SBS	Chr12	19826149	C-T	Hetero	INTERGENIC
SBS	Chr12	26468113	T-A	Hetero	INTERGENIC
SBS	Chr12	26468114	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1885617	1885637	20
Deletion	Chr11	2621144	2621145	1
Deletion	Chr5	6115663	6115668	5
Deletion	Chr5	6802323	6802326	3
Deletion	Chr11	8772001	9001000	228999	9
Deletion	Chr4	11475097	11475099	2
Deletion	Chr5	13478114	13478115	1
Deletion	Chr1	17189332	17189497	165
Deletion	Chr4	17722892	17722893	1
Deletion	Chr1	18156001	18161000	4999
Deletion	Chr2	18287423	18287424	1
Deletion	Chr5	19110927	19110943	16
Deletion	Chr5	19299864	19299865	1
Deletion	Chr6	20123323	20123324	1
Deletion	Chr6	21488030	21488033	3
Deletion	Chr7	25943001	25947000	3999	OsKitaake07g237100
Deletion	Chr5	30258420	30258421	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18154946	18155411
Inversion	Chr1	18154953	18161134
Inversion	Chr1	33927433	34704917	OsKitaake01g348800
Inversion	Chr1	33927434	34704923	OsKitaake01g348800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes