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Mutant Information

Mutant Name	FN1982-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1982-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7324407 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 9142085 A-T Hetero INTERGENIC
SBS Chr1 9142086 A-T Hetero INTERGENIC
SBS Chr2 16747076 C-T Hetero INTRON
SBS Chr3 14012010 A-G Hetero INTERGENIC
SBS Chr3 18445095 C-T Hetero INTRON
SBS Chr3 20521948 G-T Hetero INTERGENIC
SBS Chr3 20521950 A-T Hetero INTERGENIC
SBS Chr5 9708485 G-A Hetero INTERGENIC
SBS Chr6 14542692 C-T Homo INTERGENIC
SBS Chr7 2346475 C-G Homo INTERGENIC
SBS Chr7 3257663 G-A Hetero INTERGENIC
SBS Chr7 20408774 G-A Homo INTERGENIC
SBS Chr8 24229722 G-A Hetero INTERGENIC
SBS Chr8 25094064 C-T Hetero INTERGENIC
SBS Chr9 7112374 C-T Hetero INTERGENIC
SBS Chr9 13288492 G-A Homo INTERGENIC
SBS Chr10 6614233 C-G Homo INTERGENIC
SBS Chr10 9788528 C-T Homo SYNONYMOUS_CODING
SBS Chr10 17461049 G-T Hetero INTRON
SBS Chr11 18327646 T-A Hetero INTERGENIC
SBS Chr12 27004037 G-T Hetero INTRON

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 4060955 4060961 6 OsKitaake03g057800
Deletion Chr10 5202159 5202160 1
Deletion Chr10 9568499 9568503 4
Deletion Chr4 12909542 12909551 9
Deletion Chr11 14510127 14510498 371
Deletion Chr1 19653712 19653719 7
Deletion Chr2 25057569 25057571 2
Deletion Chr3 25736378 25736382 4
Deletion Chr2 30073583 30073584 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 33919377 33919380 2
Insertion Chr3 18199327 18199335 7
Insertion Chr8 8353839 8353843 3
Insertion Chr9 3750986 3750989 2
Insertion Chr10 11980450 11980453 2
Insertion Chr11 17215403 17215406 2
Insertion Chr12 22079611 22079613 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 22439755 23222169 2
Inversion Chr8 22439758 23222169 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 18240832 Chr1 26955321 OsKitaake01g261900
Translocation Chr5 18240841 Chr1 26956411 OsKitaake01g261900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7324407	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	9142085	A-T	Hetero	INTERGENIC
SBS	Chr1	9142086	A-T	Hetero	INTERGENIC
SBS	Chr2	16747076	C-T	Hetero	INTRON
SBS	Chr3	14012010	A-G	Hetero	INTERGENIC
SBS	Chr3	18445095	C-T	Hetero	INTRON
SBS	Chr3	20521948	G-T	Hetero	INTERGENIC
SBS	Chr3	20521950	A-T	Hetero	INTERGENIC
SBS	Chr5	9708485	G-A	Hetero	INTERGENIC
SBS	Chr6	14542692	C-T	Homo	INTERGENIC
SBS	Chr7	2346475	C-G	Homo	INTERGENIC
SBS	Chr7	3257663	G-A	Hetero	INTERGENIC
SBS	Chr7	20408774	G-A	Homo	INTERGENIC
SBS	Chr8	24229722	G-A	Hetero	INTERGENIC
SBS	Chr8	25094064	C-T	Hetero	INTERGENIC
SBS	Chr9	7112374	C-T	Hetero	INTERGENIC
SBS	Chr9	13288492	G-A	Homo	INTERGENIC
SBS	Chr10	6614233	C-G	Homo	INTERGENIC
SBS	Chr10	9788528	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr10	17461049	G-T	Hetero	INTRON
SBS	Chr11	18327646	T-A	Hetero	INTERGENIC
SBS	Chr12	27004037	G-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	4060955	4060961	6	OsKitaake03g057800
Deletion	Chr10	5202159	5202160	1
Deletion	Chr10	9568499	9568503	4
Deletion	Chr4	12909542	12909551	9
Deletion	Chr11	14510127	14510498	371
Deletion	Chr1	19653712	19653719	7
Deletion	Chr2	25057569	25057571	2
Deletion	Chr3	25736378	25736382	4
Deletion	Chr2	30073583	30073584	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	22439755	23222169	2
Inversion	Chr8	22439758	23222169	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes