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| Mutant Information |
|---|
| Mutant Name | FN1983-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1983-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6098226 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 4072306 | T-G | Hetero | INTRON | |
| SBS | Chr2 | 4072311 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 34075287 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 16805976 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 23858940 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 99189 | G-A | Homo | INTRON | |
| SBS | Chr4 | 1663156 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 6496202 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 24280961 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 29765244 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 29765245 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 5390514 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 7333952 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 19925078 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 23310183 | G-T | Homo | INTRON | |
| SBS | Chr7 | 12448015 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 28469592 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 29195125 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12406863 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 18229489 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 12290771 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1026999 | G-C | Homo | INTRON | |
| SBS | Chr12 | 5444239 | G-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2410615 | 2410616 | 1 | |
| Deletion | Chr1 | 4738001 | 4747000 | 8999 | 2 |
| Deletion | Chr12 | 6767829 | 6767839 | 10 | |
| Deletion | Chr1 | 7224344 | 7224349 | 5 | |
| Deletion | Chr11 | 9087001 | 9361000 | 273999 | 18 |
| Deletion | Chr1 | 18014635 | 18014720 | 85 | |
| Deletion | Chr11 | 19299768 | 19299770 | 2 | |
| Deletion | Chr7 | 25262218 | 25262219 | 1 | |
| Deletion | Chr12 | 25493054 | 25493055 | 1 | |
| Deletion | Chr11 | 26570453 | 26570455 | 2 | |
| Deletion | Chr1 | 26822001 | 26836000 | 13999 | OsKitaake01g260850 |
| Deletion | Chr2 | 27791231 | 27791232 | 1 | OsKitaake02g279400 |
| Deletion | Chr1 | 27960414 | 27960514 | 100 | |
| Deletion | Chr4 | 34748045 | 34748192 | 147 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 14377552 | 14377554 | 1 | OsKitaake02g155500  |
| Insertion | Chr9 | 10068067 | 10068069 | 1 | |
| Insertion | Chr10 | 21368120 | 21368123 | 2 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 11831649 | Chr5 | 4784077 | |
| Translocation | Chr12 | 11831656 | Chr2 | 15556879 | |
| Translocation | Chr12 | 11834925 | Chr1 | 19342539 | |
| Translocation | Chr8 | 28302577 | Chr6 | 3977321 | |
| Translocation | Chr8 | 28308164 | Chr6 | 3977229 |