Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1984-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1984-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19459119 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21980311 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 33119898 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 36238617 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 36566636 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 39205383 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3497793 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 8482586 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 15227714 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33136289 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 1463816 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 16641585 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 20614338 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 32942972 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g350000 |
| SBS | Chr3 | 34266201 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g370700 |
| SBS | Chr3 | 34477769 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 3960772 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11197060 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11950291 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 4859189 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g054500 |
| SBS | Chr5 | 8603844 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 16739108 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10752958 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 13031084 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 22279614 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13998966 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16517543 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 5691874 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g039400 |
| SBS | Chr10 | 17182561 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20711895 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 14673559 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 10296549 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13943504 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17956593 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 20739825 | G-A | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 6310911 | 6310912 | 1 | OsKitaake06g082000 |
| Deletion | Chr2 | 6576716 | 6576717 | 1 | |
| Deletion | Chr8 | 6949879 | 6949880 | 1 | |
| Deletion | Chr11 | 7786835 | 7786981 | 146 | |
| Deletion | Chr7 | 8464411 | 8464484 | 73 | |
| Deletion | Chr5 | 10928001 | 10937000 | 8999 | |
| Deletion | Chr4 | 11721632 | 11721634 | 2 | |
| Deletion | Chr6 | 12617857 | 12617860 | 3 | |
| Deletion | Chr8 | 18159531 | 18159532 | 1 | |
| Deletion | Chr2 | 18645983 | 18646071 | 88 | |
| Deletion | Chr8 | 18768633 | 18768635 | 2 | |
| Deletion | Chr3 | 20337876 | 20337877 | 1 | |
| Deletion | Chr2 | 33619880 | 33619881 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 34296192 | 34296195 | 2 | |
| Insertion | Chr5 | 17355084 | 17355087 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 35639737 | 35698448 | OsKitaake03g391200 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 1604077 | Chr1 | 31151440 | OsKitaake01g311000 |
| Translocation | Chr8 | 1604089 | Chr1 | 31150582 | OsKitaake01g311000 |
| Translocation | Chr11 | 21571387 | Chr3 | 35639728 | OsKitaake03g391200 |
| Translocation | Chr11 | 21575044 | Chr3 | 35698432 | OsKitaake11g170300 |