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Mutant Information

Mutant Name	FN1985-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1985-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 4127379 G-A Hetero INTERGENIC
SBS Chr2 15399045 C-T Homo INTRON
SBS Chr2 30298399 A-G Homo INTERGENIC
SBS Chr2 30905222 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g315300
SBS Chr2 34103756 T-A Hetero INTERGENIC
SBS Chr2 36909407 C-T Hetero INTRON
SBS Chr4 14909737 T-C Homo INTERGENIC
SBS Chr4 16732263 C-T Homo INTRON
SBS Chr4 26348287 C-T Hetero INTERGENIC
SBS Chr5 9148959 C-T Hetero INTERGENIC
SBS Chr5 11686318 C-T Hetero UTR_5_PRIME
SBS Chr6 1805247 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g021700
SBS Chr6 2454882 G-T Hetero UTR_3_PRIME
SBS Chr6 8898862 T-G Homo INTERGENIC
SBS Chr6 9771623 G-A Homo INTERGENIC
SBS Chr6 9771624 C-A Homo INTERGENIC
SBS Chr6 10570457 T-A Homo NON_SYNONYMOUS_CODING OsKitaake06g118700
SBS Chr6 10570458 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g118700
SBS Chr6 24505703 C-T Hetero INTERGENIC
SBS Chr7 569345 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 727698 A-G Hetero INTERGENIC
SBS Chr7 11256018 G-A Homo INTRON
SBS Chr8 12547878 C-T Hetero INTERGENIC
SBS Chr10 7205524 G-T Hetero INTERGENIC
SBS Chr10 7205525 T-A Hetero INTERGENIC
SBS Chr10 7205526 G-A Hetero INTERGENIC
SBS Chr12 12270558 G-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2073001 2092000 18999 5
Deletion Chr5 4909873 4909889 16
Deletion Chr6 9388113 9388114 1
Deletion Chr4 10136102 10136108 6
Deletion Chr2 11394361 11394366 5
Deletion Chr7 13718001 13730000 11999
Deletion Chr7 17301702 17301703 1
Deletion Chr9 17796872 17796875 3
Deletion Chr9 21203635 21203636 1
Deletion Chr12 22512522 22512524 2
Deletion Chr1 23944171 23944172 1
Deletion Chr11 24562001 24607000 44999 5
Deletion Chr3 25156001 25200000 43999 2
Deletion Chr3 26640921 26640985 64
Deletion Chr2 27761738 27761749 11 OsKitaake02g279100
Deletion Chr4 28155543 28155544 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18926298 18926301 2
Insertion Chr7 12045873 12045875 1
Insertion Chr8 2708292 2708294 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1615133 1615481 OsKitaake04g010900
Inversion Chr11 2996404 2996731 OsKitaake11g042300
Inversion Chr7 11784184 11784466 OsKitaake07g108600
Inversion Chr6 17015859 17016047
Inversion Chr1 23389436 23389595
Inversion Chr5 26882656 27071570 2
Inversion Chr5 26883586 27071576 OsKitaake05g243000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	4127379	G-A	Hetero	INTERGENIC
SBS	Chr2	15399045	C-T	Homo	INTRON
SBS	Chr2	30298399	A-G	Homo	INTERGENIC
SBS	Chr2	30905222	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g315300
SBS	Chr2	34103756	T-A	Hetero	INTERGENIC
SBS	Chr2	36909407	C-T	Hetero	INTRON
SBS	Chr4	14909737	T-C	Homo	INTERGENIC
SBS	Chr4	16732263	C-T	Homo	INTRON
SBS	Chr4	26348287	C-T	Hetero	INTERGENIC
SBS	Chr5	9148959	C-T	Hetero	INTERGENIC
SBS	Chr5	11686318	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	1805247	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g021700
SBS	Chr6	2454882	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	8898862	T-G	Homo	INTERGENIC
SBS	Chr6	9771623	G-A	Homo	INTERGENIC
SBS	Chr6	9771624	C-A	Homo	INTERGENIC
SBS	Chr6	10570457	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g118700
SBS	Chr6	10570458	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g118700
SBS	Chr6	24505703	C-T	Hetero	INTERGENIC
SBS	Chr7	569345	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	727698	A-G	Hetero	INTERGENIC
SBS	Chr7	11256018	G-A	Homo	INTRON
SBS	Chr8	12547878	C-T	Hetero	INTERGENIC
SBS	Chr10	7205524	G-T	Hetero	INTERGENIC
SBS	Chr10	7205525	T-A	Hetero	INTERGENIC
SBS	Chr10	7205526	G-A	Hetero	INTERGENIC
SBS	Chr12	12270558	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2073001	2092000	18999	5
Deletion	Chr5	4909873	4909889	16
Deletion	Chr6	9388113	9388114	1
Deletion	Chr4	10136102	10136108	6
Deletion	Chr2	11394361	11394366	5
Deletion	Chr7	13718001	13730000	11999
Deletion	Chr7	17301702	17301703	1
Deletion	Chr9	17796872	17796875	3
Deletion	Chr9	21203635	21203636	1
Deletion	Chr12	22512522	22512524	2
Deletion	Chr1	23944171	23944172	1
Deletion	Chr11	24562001	24607000	44999	5
Deletion	Chr3	25156001	25200000	43999	2
Deletion	Chr3	26640921	26640985	64
Deletion	Chr2	27761738	27761749	11	OsKitaake02g279100
Deletion	Chr4	28155543	28155544	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1615133	1615481	OsKitaake04g010900
Inversion	Chr11	2996404	2996731	OsKitaake11g042300
Inversion	Chr7	11784184	11784466	OsKitaake07g108600
Inversion	Chr6	17015859	17016047
Inversion	Chr1	23389436	23389595
Inversion	Chr5	26882656	27071570	2
Inversion	Chr5	26883586	27071576	OsKitaake05g243000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes