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Mutant Information

Mutant Name	FN1989-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1989-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3135409 C-A Hetero INTERGENIC
SBS Chr1 15034810 G-A Homo INTRON
SBS Chr1 17900090 C-T Homo INTERGENIC
SBS Chr1 19762593 T-C Hetero INTRON
SBS Chr1 20798801 A-T Hetero INTERGENIC
SBS Chr1 24384516 A-T Homo INTERGENIC
SBS Chr2 32822032 G-A Homo INTERGENIC
SBS Chr3 1364112 C-T Hetero INTERGENIC
SBS Chr3 8079169 G-A Hetero STOP_GAINED OsKitaake03g112000
SBS Chr3 23376382 T-C Homo INTRON
SBS Chr3 26242676 G-A Homo INTERGENIC
SBS Chr3 31612378 G-T Homo INTRON
SBS Chr3 36981853 G-A Homo INTERGENIC
SBS Chr4 678074 T-C Hetero INTERGENIC
SBS Chr5 2702016 G-T Hetero INTERGENIC
SBS Chr5 15570652 G-T Homo INTERGENIC
SBS Chr5 15716778 C-T Homo INTERGENIC
SBS Chr5 30198737 G-A Hetero INTERGENIC
SBS Chr6 6974639 G-A Hetero INTERGENIC
SBS Chr7 9364604 C-T Hetero INTERGENIC
SBS Chr7 13268852 G-A Hetero INTERGENIC
SBS Chr9 17367357 G-A Homo INTERGENIC
SBS Chr10 612323 G-A Hetero INTERGENIC
SBS Chr10 2936627 G-A Hetero INTERGENIC
SBS Chr10 10369721 G-C Hetero INTERGENIC
SBS Chr10 10520949 C-T Hetero INTERGENIC
SBS Chr10 12514785 C-A Hetero INTERGENIC
SBS Chr11 789822 C-T Hetero INTERGENIC
SBS Chr12 14076410 A-G Hetero INTERGENIC
SBS Chr12 21039207 A-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 8413628 8413630 2
Deletion Chr2 9537868 9537877 9
Deletion Chr4 9747001 9783000 35999
Deletion Chr4 9788001 9796000 7999 OsKitaake04g051600
Deletion Chr8 10806835 10806909 74
Deletion Chr12 11718018 11718183 165
Deletion Chr5 12394221 12394224 3
Deletion Chr4 21227987 21227991 4
Deletion Chr1 21788083 21788089 6
Deletion Chr4 21974898 21974899 1
Deletion Chr1 29824478 29824479 1
Deletion Chr4 32869710 32869714 4
Deletion Chr1 41648730 41648734 4
Deletion Chr1 41813095 41813103 8
Deletion Chr1 41913788 41913790 2 OsKitaake01g459200
Deletion Chr1 42365459 42365463 4

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28155523 28155526 2
Insertion Chr2 4338621 4338624 2
Insertion Chr2 6797855 6797858 2
Insertion Chr12 22085697 22085700 2
Insertion Chr12 24386963 24386966 2
Insertion Chr12 11211139 11211141 1
Insertion Chr12 11697894 11697897 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 5762205 Chr1 18245510
Translocation Chr2 5775625 Chr1 18245227
Translocation Chr7 13290329 Chr1 42203359 OsKitaake01g464200
Translocation Chr7 13290334 Chr1 42193913
Translocation Chr5 20623595 Chr3 35433631 OsKitaake05g164500
Translocation Chr5 20623601 Chr3 35462176 OsKitaake05g164500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3135409	C-A	Hetero	INTERGENIC
SBS	Chr1	15034810	G-A	Homo	INTRON
SBS	Chr1	17900090	C-T	Homo	INTERGENIC
SBS	Chr1	19762593	T-C	Hetero	INTRON
SBS	Chr1	20798801	A-T	Hetero	INTERGENIC
SBS	Chr1	24384516	A-T	Homo	INTERGENIC
SBS	Chr2	32822032	G-A	Homo	INTERGENIC
SBS	Chr3	1364112	C-T	Hetero	INTERGENIC
SBS	Chr3	8079169	G-A	Hetero	STOP_GAINED	OsKitaake03g112000
SBS	Chr3	23376382	T-C	Homo	INTRON
SBS	Chr3	26242676	G-A	Homo	INTERGENIC
SBS	Chr3	31612378	G-T	Homo	INTRON
SBS	Chr3	36981853	G-A	Homo	INTERGENIC
SBS	Chr4	678074	T-C	Hetero	INTERGENIC
SBS	Chr5	2702016	G-T	Hetero	INTERGENIC
SBS	Chr5	15570652	G-T	Homo	INTERGENIC
SBS	Chr5	15716778	C-T	Homo	INTERGENIC
SBS	Chr5	30198737	G-A	Hetero	INTERGENIC
SBS	Chr6	6974639	G-A	Hetero	INTERGENIC
SBS	Chr7	9364604	C-T	Hetero	INTERGENIC
SBS	Chr7	13268852	G-A	Hetero	INTERGENIC
SBS	Chr9	17367357	G-A	Homo	INTERGENIC
SBS	Chr10	612323	G-A	Hetero	INTERGENIC
SBS	Chr10	2936627	G-A	Hetero	INTERGENIC
SBS	Chr10	10369721	G-C	Hetero	INTERGENIC
SBS	Chr10	10520949	C-T	Hetero	INTERGENIC
SBS	Chr10	12514785	C-A	Hetero	INTERGENIC
SBS	Chr11	789822	C-T	Hetero	INTERGENIC
SBS	Chr12	14076410	A-G	Hetero	INTERGENIC
SBS	Chr12	21039207	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	8413628	8413630	2
Deletion	Chr2	9537868	9537877	9
Deletion	Chr4	9747001	9783000	35999
Deletion	Chr4	9788001	9796000	7999	OsKitaake04g051600
Deletion	Chr8	10806835	10806909	74
Deletion	Chr12	11718018	11718183	165
Deletion	Chr5	12394221	12394224	3
Deletion	Chr4	21227987	21227991	4
Deletion	Chr1	21788083	21788089	6
Deletion	Chr4	21974898	21974899	1
Deletion	Chr1	29824478	29824479	1
Deletion	Chr4	32869710	32869714	4
Deletion	Chr1	41648730	41648734	4
Deletion	Chr1	41813095	41813103	8
Deletion	Chr1	41913788	41913790	2	OsKitaake01g459200
Deletion	Chr1	42365459	42365463	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	5762205	Chr1	18245510
Translocation	Chr2	5775625	Chr1	18245227
Translocation	Chr7	13290329	Chr1	42203359	OsKitaake01g464200
Translocation	Chr7	13290334	Chr1	42193913
Translocation	Chr5	20623595	Chr3	35433631	OsKitaake05g164500
Translocation	Chr5	20623601	Chr3	35462176	OsKitaake05g164500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes