Search Kitaake

Mutant Information

Mutant Name	FN1990-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1990-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7009814 G-A Hetero INTERGENIC
SBS Chr1 10402715 T-A Hetero INTERGENIC
SBS Chr1 20408811 G-T Hetero INTERGENIC
SBS Chr2 17617456 C-T Hetero INTRON
SBS Chr2 27110222 C-T Homo INTERGENIC
SBS Chr3 19221805 A-C Hetero INTERGENIC
SBS Chr3 22191605 G-A Hetero INTERGENIC
SBS Chr4 23149340 G-A Homo INTERGENIC
SBS Chr4 24155520 T-G Homo INTERGENIC
SBS Chr4 24499249 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g159700
SBS Chr5 8706429 C-A Homo INTERGENIC
SBS Chr5 28445513 G-T Hetero INTERGENIC
SBS Chr6 4231283 T-C Homo INTERGENIC
SBS Chr6 15078628 A-G Hetero INTERGENIC
SBS Chr7 11186256 C-A Homo INTERGENIC
SBS Chr7 20192879 G-A Hetero INTRON
SBS Chr7 26608962 G-A Homo INTRON
SBS Chr7 27698768 T-G Homo INTERGENIC
SBS Chr9 7355451 G-A Homo INTERGENIC
SBS Chr9 22443165 G-A Hetero INTRON
SBS Chr10 13145000 C-T Homo INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 15560665 T-A Hetero INTERGENIC
SBS Chr12 21300573 G-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 82182 82184 2
Deletion Chr9 1067251 1067264 13
Deletion Chr11 5882001 5953000 70999 8
Deletion Chr10 8685222 8685387 165
Deletion Chr7 11984659 11984660 1
Deletion Chr1 13684134 13684135 1
Deletion Chr8 15871742 15871743 1
Deletion Chr7 15962682 15962683 1
Deletion Chr2 26638001 26695000 56999 7
Deletion Chr4 34771091 34771093 2
Deletion Chr2 35332312 35332322 10

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 19348015 19348018 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 4794078 Chr1 40901825 2
Translocation Chr2 4794090 Chr1 40901437 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7009814	G-A	Hetero	INTERGENIC
SBS	Chr1	10402715	T-A	Hetero	INTERGENIC
SBS	Chr1	20408811	G-T	Hetero	INTERGENIC
SBS	Chr2	17617456	C-T	Hetero	INTRON
SBS	Chr2	27110222	C-T	Homo	INTERGENIC
SBS	Chr3	19221805	A-C	Hetero	INTERGENIC
SBS	Chr3	22191605	G-A	Hetero	INTERGENIC
SBS	Chr4	23149340	G-A	Homo	INTERGENIC
SBS	Chr4	24155520	T-G	Homo	INTERGENIC
SBS	Chr4	24499249	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g159700
SBS	Chr5	8706429	C-A	Homo	INTERGENIC
SBS	Chr5	28445513	G-T	Hetero	INTERGENIC
SBS	Chr6	4231283	T-C	Homo	INTERGENIC
SBS	Chr6	15078628	A-G	Hetero	INTERGENIC
SBS	Chr7	11186256	C-A	Homo	INTERGENIC
SBS	Chr7	20192879	G-A	Hetero	INTRON
SBS	Chr7	26608962	G-A	Homo	INTRON
SBS	Chr7	27698768	T-G	Homo	INTERGENIC
SBS	Chr9	7355451	G-A	Homo	INTERGENIC
SBS	Chr9	22443165	G-A	Hetero	INTRON
SBS	Chr10	13145000	C-T	Homo	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	15560665	T-A	Hetero	INTERGENIC
SBS	Chr12	21300573	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	82182	82184	2
Deletion	Chr9	1067251	1067264	13
Deletion	Chr11	5882001	5953000	70999	8
Deletion	Chr10	8685222	8685387	165
Deletion	Chr7	11984659	11984660	1
Deletion	Chr1	13684134	13684135	1
Deletion	Chr8	15871742	15871743	1
Deletion	Chr7	15962682	15962683	1
Deletion	Chr2	26638001	26695000	56999	7
Deletion	Chr4	34771091	34771093	2
Deletion	Chr2	35332312	35332322	10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	4794078	Chr1	40901825	2
Translocation	Chr2	4794090	Chr1	40901437	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes