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Mutant Information |
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Mutant Name | FN1994-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1994-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 15437731 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 30401028 | G-T | Homo | UTR_5_PRIME | |
SBS | Chr1 | 30401030 | C-T | Homo | UTR_5_PRIME | |
SBS | Chr2 | 16990477 | T-C | Hetero | INTERGENIC | |
SBS | Chr2 | 17055866 | C-T | Hetero | INTERGENIC | |
SBS | Chr2 | 28752468 | T-C | Hetero | INTERGENIC | |
SBS | Chr2 | 30073865 | G-C | Homo | INTERGENIC | |
SBS | Chr2 | 34820124 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 4592997 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 13827703 | A-G | Hetero | INTRON | |
SBS | Chr3 | 14145016 | C-T | Hetero | INTRON | |
SBS | Chr3 | 37051132 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 26609684 | G-A | Hetero | INTRON | |
SBS | Chr4 | 34901981 | G-A | Homo | INTRON | |
SBS | Chr5 | 809825 | T-C | Homo | UTR_5_PRIME | |
SBS | Chr5 | 8705270 | G-A | Hetero | INTERGENIC | |
SBS | Chr5 | 9466754 | C-T | Hetero | INTERGENIC | |
SBS | Chr5 | 14539504 | G-T | Hetero | INTERGENIC | |
SBS | Chr5 | 23354471 | T-A | Homo | INTERGENIC | |
SBS | Chr6 | 29465834 | A-G | Hetero | INTERGENIC | |
SBS | Chr7 | 16359170 | A-T | Homo | INTERGENIC | |
SBS | Chr7 | 18408287 | T-C | Homo | INTRON | |
SBS | Chr7 | 23972622 | G-T | Homo | START_GAINED | |
SBS | Chr7 | 23972623 | G-T | Homo | UTR_5_PRIME | |
SBS | Chr7 | 26971983 | T-C | Hetero | INTERGENIC | |
SBS | Chr11 | 8979306 | A-C | Hetero | INTERGENIC | |
SBS | Chr11 | 10965219 | T-C | Hetero | INTERGENIC | |
SBS | Chr11 | 11014279 | T-A | Hetero | INTRON | |
SBS | Chr11 | 12099637 | G-A | Hetero | UTR_3_PRIME |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr9 | 1154001 | 1173000 | 18999 | 2 |
Deletion | Chr4 | 11011298 | 11011309 | 11 | |
Deletion | Chr11 | 12521222 | 12521707 | 485 | |
Deletion | Chr8 | 13455999 | 13456001 | 2 | OsKitaake08g110460 |
Deletion | Chr4 | 14890001 | 14909000 | 18999 | |
Deletion | Chr3 | 16295771 | 16295775 | 4 | |
Deletion | Chr12 | 17946799 | 17946804 | 5 | |
Deletion | Chr6 | 22052144 | 22052146 | 2 | OsKitaake06g194200 |
Deletion | Chr11 | 22249790 | 22249793 | 3 | OsKitaake11g176100 |
Deletion | Chr5 | 30223346 | 30223347 | 1 | |
Deletion | Chr1 | 30724001 | 30728000 | 3999 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr5 | 745553 | 745556 | 2 | |
Insertion | Chr12 | 10596599 | 10596602 | 2 | |
Insertion | Chr2 | 13778278 | 13778280 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr9 | 10007960 | 10076909 | OsKitaake09g061500 |