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Mutant Information

Mutant Name	FN1995-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1995-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 161125 C-T Hetero INTRON
SBS Chr2 8242646 A-T Hetero INTERGENIC
SBS Chr2 18146242 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g180500
SBS Chr2 19360710 T-A Homo INTERGENIC
SBS Chr3 7306189 C-T Homo INTRON
SBS Chr3 24875394 T-C Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr4 16392640 C-T Hetero INTERGENIC
SBS Chr5 12814724 G-A Homo INTERGENIC
SBS Chr5 18366418 T-C Homo SYNONYMOUS_CODING
SBS Chr6 15593299 C-T Homo INTERGENIC
SBS Chr6 17530567 A-G Homo INTERGENIC
SBS Chr7 8476191 A-G Homo SYNONYMOUS_CODING
SBS Chr7 16470403 A-G Homo INTERGENIC
SBS Chr8 13967710 G-A Homo INTRON
SBS Chr9 18064446 G-A Hetero INTERGENIC
SBS Chr11 18806049 G-C Hetero INTERGENIC
SBS Chr11 19079634 G-A Hetero INTERGENIC
SBS Chr11 29059980 T-C Hetero INTERGENIC
SBS Chr12 25194455 C-A Homo NON_SYNONYMOUS_CODING OsKitaake12g204900

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2835537 2835539 2
Deletion Chr3 3927259 3927264 5
Deletion Chr5 4070341 4070343 2
Deletion Chr10 8654782 8654829 47 OsKitaake10g053166
Deletion Chr2 13844476 13844477 1
Deletion Chr8 13915933 13915934 1
Deletion Chr2 18443198 18443199 1
Deletion Chr5 20410365 20410366 1
Deletion Chr5 20963864 20963875 11
Deletion Chr1 23382411 23382414 3 OsKitaake01g223801
Deletion Chr1 23470944 23470946 2
Deletion Chr6 24032519 24032523 4
Deletion Chr4 26377649 26377652 3
Deletion Chr1 29077620 29077622 2
Deletion Chr1 32899149 32899156 7
Deletion Chr2 34844329 34844334 5
Deletion Chr3 35841377 35841382 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9660691 9660694 2
Insertion Chr6 5878477 5878480 2
Insertion Chr9 7344810 7344813 2
Insertion Chr3 26310606 26310609 2
Insertion Chr4 18215924 18215926 1
Insertion Chr12 11689040 11689042 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 1201672 1201800
Inversion Chr6 15233647 15234058
Inversion Chr11 20572535 20572721
Inversion Chr11 20763298 20763553

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	161125	C-T	Hetero	INTRON
SBS	Chr2	8242646	A-T	Hetero	INTERGENIC
SBS	Chr2	18146242	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g180500
SBS	Chr2	19360710	T-A	Homo	INTERGENIC
SBS	Chr3	7306189	C-T	Homo	INTRON
SBS	Chr3	24875394	T-C	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr4	16392640	C-T	Hetero	INTERGENIC
SBS	Chr5	12814724	G-A	Homo	INTERGENIC
SBS	Chr5	18366418	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr6	15593299	C-T	Homo	INTERGENIC
SBS	Chr6	17530567	A-G	Homo	INTERGENIC
SBS	Chr7	8476191	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	16470403	A-G	Homo	INTERGENIC
SBS	Chr8	13967710	G-A	Homo	INTRON
SBS	Chr9	18064446	G-A	Hetero	INTERGENIC
SBS	Chr11	18806049	G-C	Hetero	INTERGENIC
SBS	Chr11	19079634	G-A	Hetero	INTERGENIC
SBS	Chr11	29059980	T-C	Hetero	INTERGENIC
SBS	Chr12	25194455	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g204900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2835537	2835539	2
Deletion	Chr3	3927259	3927264	5
Deletion	Chr5	4070341	4070343	2
Deletion	Chr10	8654782	8654829	47	OsKitaake10g053166
Deletion	Chr2	13844476	13844477	1
Deletion	Chr8	13915933	13915934	1
Deletion	Chr2	18443198	18443199	1
Deletion	Chr5	20410365	20410366	1
Deletion	Chr5	20963864	20963875	11
Deletion	Chr1	23382411	23382414	3	OsKitaake01g223801
Deletion	Chr1	23470944	23470946	2
Deletion	Chr6	24032519	24032523	4
Deletion	Chr4	26377649	26377652	3
Deletion	Chr1	29077620	29077622	2
Deletion	Chr1	32899149	32899156	7
Deletion	Chr2	34844329	34844334	5
Deletion	Chr3	35841377	35841382	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1201672	1201800
Inversion	Chr6	15233647	15234058
Inversion	Chr11	20572535	20572721
Inversion	Chr11	20763298	20763553

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes