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Mutant Information

Mutant Name	FN1997-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1997-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1643768 A-C Homo INTERGENIC
SBS Chr1 25465943 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g246800
SBS Chr1 34123414 C-A Hetero INTERGENIC
SBS Chr1 43524012 G-A Hetero INTRON
SBS Chr2 7664245 C-T Hetero INTERGENIC
SBS Chr2 11711687 G-A Hetero INTERGENIC
SBS Chr2 28387446 C-T Hetero INTRON
SBS Chr3 8671817 A-T Hetero INTERGENIC
SBS Chr3 13577163 C-T Homo INTERGENIC
SBS Chr3 30859610 C-T Hetero INTRON
SBS Chr3 31871361 C-T Homo INTRON
SBS Chr4 2207816 T-C Hetero INTERGENIC
SBS Chr4 2527282 A-G Hetero INTERGENIC
SBS Chr4 3822772 T-A Homo INTERGENIC
SBS Chr4 5159549 A-G Hetero INTERGENIC
SBS Chr5 3641918 G-A Homo INTERGENIC
SBS Chr5 5395653 C-T Hetero INTERGENIC
SBS Chr5 20860685 A-G Hetero INTERGENIC
SBS Chr5 24137139 A-G Homo INTRON
SBS Chr5 28900532 G-T Homo INTRON
SBS Chr6 2480731 C-A Homo NON_SYNONYMOUS_CODING OsKitaake06g032900
SBS Chr6 5589603 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g074200
SBS Chr6 8918159 G-T Homo INTRON
SBS Chr6 13330753 C-T Homo INTERGENIC
SBS Chr7 21127978 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 2858060 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 5083732 C-T Hetero INTERGENIC
SBS Chr8 8248473 G-A Hetero INTERGENIC
SBS Chr8 8248474 G-C Hetero INTERGENIC
SBS Chr8 26497999 T-A Hetero INTERGENIC
SBS Chr8 28230444 A-G Hetero INTERGENIC
SBS Chr9 3942551 C-A Hetero INTRON
SBS Chr9 13195047 G-A Homo INTERGENIC
SBS Chr9 14284901 T-C Hetero INTERGENIC
SBS Chr11 12696049 A-T Hetero INTERGENIC
SBS Chr11 21721073 G-C Hetero INTERGENIC
SBS Chr12 3487022 G-T Hetero INTERGENIC
SBS Chr12 8420458 A-G Hetero INTRON
SBS Chr12 12733686 G-A Hetero INTERGENIC
SBS Chr12 15156542 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g119000
SBS Chr12 15612050 C-G Hetero INTERGENIC
SBS Chr12 18526570 T-C Homo UTR_3_PRIME
SBS Chr12 18880484 C-A Hetero INTERGENIC
SBS Chr12 22145045 C-T Hetero INTRON

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1855949 1855955 6
Deletion Chr3 4646291 4646298 7
Deletion Chr6 9121720 9121732 12
Deletion Chr11 10022001 10136000 113999 11
Deletion Chr11 11598001 11663000 64999
Deletion Chr10 13525053 13525055 2
Deletion Chr9 13931445 13931447 2
Deletion Chr10 15996419 15996420 1
Deletion Chr8 17264253 17264339 86
Deletion Chr1 18316680 18316682 2
Deletion Chr10 18819828 18819829 1
Deletion Chr9 19459225 19459232 7 OsKitaake09g158700
Deletion Chr6 22150013 22150033 20
Deletion Chr2 22757754 22757755 1
Deletion Chr1 23581704 23581706 2
Deletion Chr5 27657357 27657361 4
Deletion Chr3 30310852 30310858 6
Deletion Chr3 31983620 31983622 2
Deletion Chr3 32277580 32277581 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40138112 40138114 1
Insertion Chr5 11573950 11573953 2
Insertion Chr6 2211286 2211291 4

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 10739752 11590551
Inversion Chr11 10739762 11590569
Inversion Chr4 14155621 14567226
Inversion Chr11 14756890 14821890
Inversion Chr11 14821892 14827985

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 14966175 Chr10 16170096
Translocation Chr11 14966217 Chr10 16170461

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1643768	A-C	Homo	INTERGENIC
SBS	Chr1	25465943	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g246800
SBS	Chr1	34123414	C-A	Hetero	INTERGENIC
SBS	Chr1	43524012	G-A	Hetero	INTRON
SBS	Chr2	7664245	C-T	Hetero	INTERGENIC
SBS	Chr2	11711687	G-A	Hetero	INTERGENIC
SBS	Chr2	28387446	C-T	Hetero	INTRON
SBS	Chr3	8671817	A-T	Hetero	INTERGENIC
SBS	Chr3	13577163	C-T	Homo	INTERGENIC
SBS	Chr3	30859610	C-T	Hetero	INTRON
SBS	Chr3	31871361	C-T	Homo	INTRON
SBS	Chr4	2207816	T-C	Hetero	INTERGENIC
SBS	Chr4	2527282	A-G	Hetero	INTERGENIC
SBS	Chr4	3822772	T-A	Homo	INTERGENIC
SBS	Chr4	5159549	A-G	Hetero	INTERGENIC
SBS	Chr5	3641918	G-A	Homo	INTERGENIC
SBS	Chr5	5395653	C-T	Hetero	INTERGENIC
SBS	Chr5	20860685	A-G	Hetero	INTERGENIC
SBS	Chr5	24137139	A-G	Homo	INTRON
SBS	Chr5	28900532	G-T	Homo	INTRON
SBS	Chr6	2480731	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g032900
SBS	Chr6	5589603	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g074200
SBS	Chr6	8918159	G-T	Homo	INTRON
SBS	Chr6	13330753	C-T	Homo	INTERGENIC
SBS	Chr7	21127978	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	2858060	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	5083732	C-T	Hetero	INTERGENIC
SBS	Chr8	8248473	G-A	Hetero	INTERGENIC
SBS	Chr8	8248474	G-C	Hetero	INTERGENIC
SBS	Chr8	26497999	T-A	Hetero	INTERGENIC
SBS	Chr8	28230444	A-G	Hetero	INTERGENIC
SBS	Chr9	3942551	C-A	Hetero	INTRON
SBS	Chr9	13195047	G-A	Homo	INTERGENIC
SBS	Chr9	14284901	T-C	Hetero	INTERGENIC
SBS	Chr11	12696049	A-T	Hetero	INTERGENIC
SBS	Chr11	21721073	G-C	Hetero	INTERGENIC
SBS	Chr12	3487022	G-T	Hetero	INTERGENIC
SBS	Chr12	8420458	A-G	Hetero	INTRON
SBS	Chr12	12733686	G-A	Hetero	INTERGENIC
SBS	Chr12	15156542	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g119000
SBS	Chr12	15612050	C-G	Hetero	INTERGENIC
SBS	Chr12	18526570	T-C	Homo	UTR_3_PRIME
SBS	Chr12	18880484	C-A	Hetero	INTERGENIC
SBS	Chr12	22145045	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1855949	1855955	6
Deletion	Chr3	4646291	4646298	7
Deletion	Chr6	9121720	9121732	12
Deletion	Chr11	10022001	10136000	113999	11
Deletion	Chr11	11598001	11663000	64999
Deletion	Chr10	13525053	13525055	2
Deletion	Chr9	13931445	13931447	2
Deletion	Chr10	15996419	15996420	1
Deletion	Chr8	17264253	17264339	86
Deletion	Chr1	18316680	18316682	2
Deletion	Chr10	18819828	18819829	1
Deletion	Chr9	19459225	19459232	7	OsKitaake09g158700
Deletion	Chr6	22150013	22150033	20
Deletion	Chr2	22757754	22757755	1
Deletion	Chr1	23581704	23581706	2
Deletion	Chr5	27657357	27657361	4
Deletion	Chr3	30310852	30310858	6
Deletion	Chr3	31983620	31983622	2
Deletion	Chr3	32277580	32277581	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	10739752	11590551
Inversion	Chr11	10739762	11590569
Inversion	Chr4	14155621	14567226
Inversion	Chr11	14756890	14821890
Inversion	Chr11	14821892	14827985

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes