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| Mutant Information |
|---|
| Mutant Name | FN1998-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1998-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9795913 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 19197478 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 4765202 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 31776483 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 13881900 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 19672920 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 31896887 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g336900 |
| SBS | Chr3 | 34083675 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g368100 |
| SBS | Chr4 | 2213006 | T-G | Homo | INTRON | |
| SBS | Chr4 | 2213008 | A-G | Homo | INTRON | |
| SBS | Chr4 | 27500213 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28735607 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 23055957 | T-A | Hetero | INTRON | |
| SBS | Chr5 | 23055958 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 23753386 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 6073752 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g080000 |
| SBS | Chr7 | 358666 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9968190 | A-C | Hetero | INTRON | |
| SBS | Chr9 | 7535182 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7535184 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 12841337 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12841338 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17376648 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 21653571 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16810379 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 20962163 | T-C | Hetero | INTRON |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 4730767 | 4730769 | 2 | |
| Deletion | Chr4 | 5877766 | 5877767 | 1 | OsKitaake04g029400 |
| Deletion | Chr9 | 7535129 | 7535135 | 6 | |
| Deletion | Chr10 | 9333266 | 9333269 | 3 | |
| Deletion | Chr7 | 17270838 | 17270930 | 92 | |
| Deletion | Chr9 | 19286466 | 19286469 | 3 | |
| Deletion | Chr8 | 25216406 | 25216407 | 1 | OsKitaake08g196700 |
| Deletion | Chr3 | 25941480 | 25941481 | 1 | |
| Deletion | Chr5 | 29918840 | 29918942 | 102 | |
| Deletion | Chr4 | 35695414 | 35695418 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 10232055 | 10232058 | 2 | |
| Insertion | Chr10 | 15787381 | 15787384 | 2 | |
| Insertion | Chr11 | 21352746 | 21352749 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 10415270 | 10475633 | OsKitaake12g097700 |
| Inversion | Chr12 | 10415272 | 10475627 | OsKitaake12g097700 |
| Inversion | Chr1 | 17350728 | 17608567 | |
| Inversion | Chr7 | 20630521 | 20819989 | OsKitaake07g169400 |
| Inversion | Chr7 | 20630529 | 20820001 | OsKitaake07g169400 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 12542176 | Chr3 | 11876064 | |
| Translocation | Chr5 | 23599464 | Chr3 | 11877972 | |
| Translocation | Chr5 | 26836768 | Chr4 | 12543491 |