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| Mutant Information |
|---|
| Mutant Name | FN1999-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1999-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9353991 | G-A | Homo | INTRON | |
| SBS | Chr1 | 16113507 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 26448196 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 28982642 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 734366 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 6674102 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 16831837 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26906678 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 29596339 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29655898 | T-A | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 10555876 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 30462840 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3848813 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11773656 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11773657 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11773660 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 11774020 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 19043363 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 27252676 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 1856112 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 6658235 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g076400 |
| SBS | Chr8 | 4728174 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9452831 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 12995220 | T-A | Homo | INTRON | |
| SBS | Chr8 | 27022686 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g219900 |
| SBS | Chr9 | 7527867 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 8022644 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 19152673 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 875113 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 18516353 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 9362012 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g091300 |
| SBS | Chr12 | 13605216 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21157919 | T-C | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 791709 | 791720 | 11 | |
| Deletion | Chr6 | 1136065 | 1136066 | 1 | |
| Deletion | Chr10 | 4231454 | 4231580 | 126 | |
| Deletion | Chr7 | 6406813 | 6406814 | 1 | |
| Deletion | Chr12 | 7924001 | 8009000 | 84999 | 2 |
| Deletion | Chr9 | 8386469 | 8386595 | 126 | |
| Deletion | Chr2 | 12370668 | 12370679 | 11 | |
| Deletion | Chr8 | 14147636 | 14147637 | 1 | OsKitaake08g111400 |
| Deletion | Chr11 | 25203777 | 25203786 | 9 | |
| Deletion | Chr2 | 25862801 | 25862802 | 1 | |
| Deletion | Chr8 | 28506548 | 28506550 | 2 | |
| Deletion | Chr7 | 29265418 | 29265530 | 112 | |
| Deletion | Chr1 | 29441312 | 29441315 | 3 | |
| Deletion | Chr2 | 31506988 | 31506996 | 8 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 8583794 | 8583797 | 2 | |
| Insertion | Chr5 | 26912875 | 26912878 | 2 | |
| Insertion | Chr10 | 21147975 | 21147978 | 2 | |
| Insertion | Chr10 | 23549201 | 23549204 | 2 |
Inversions: 35
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 404768 | 405108 | |
| Inversion | Chr12 | 626198 | 626354 | OsKitaake12g008100 |
| Inversion | Chr11 | 894166 | 894294 | |
| Inversion | Chr5 | 3028507 | 3028750 | OsKitaake05g035600 |
| Inversion | Chr7 | 3202622 | 3202862 | OsKitaake07g039900 |
| Inversion | Chr3 | 5551988 | 5552524 | OsKitaake03g078900 |
| Inversion | Chr3 | 6317341 | 6317517 | |
| Inversion | Chr2 | 8073803 | 8074046 | |
| Inversion | Chr6 | 11000416 | 11000567 | |
| Inversion | Chr6 | 11251039 | 11251301 | |
| Inversion | Chr4 | 11699565 | 11699943 | OsKitaake04g056900 |
| Inversion | Chr5 | 12324945 | 12484420 | OsKitaake05g097800 |
| Inversion | Chr12 | 14161955 | 14162117 | |
| Inversion | Chr9 | 14517619 | 14518008 | OsKitaake09g098600 |
| Inversion | Chr7 | 14682101 | 14682321 | |
| Inversion | Chr4 | 14910433 | 14910555 | |
| Inversion | Chr3 | 15619656 | 15619908 | OsKitaake03g200600 |
| Inversion | Chr8 | 16062806 | 16062938 | |
| Inversion | Chr2 | 16326473 | 16326808 | |
| Inversion | Chr5 | 16958834 | 16959123 | |
| Inversion | Chr5 | 18343546 | 18343875 | OsKitaake05g142700 |
| Inversion | Chr4 | 19387219 | 19387909 | |
| Inversion | Chr3 | 19931803 | 19932062 | OsKitaake03g229500 |
| Inversion | Chr4 | 20899601 | 20899962 | |
| Inversion | Chr7 | 23016584 | 23016959 | |
| Inversion | Chr6 | 23807732 | 23808177 | OsKitaake06g209600 |
| Inversion | Chr5 | 25846059 | 25846379 | OsKitaake05g227700 |
| Inversion | Chr8 | 27910878 | 27911265 | OsKitaake08g233600 |
| Inversion | Chr3 | 28196070 | 28196322 | OsKitaake03g291400 |
| Inversion | Chr3 | 28776893 | 28777354 | |
| Inversion | Chr3 | 30316692 | 30317029 | OsKitaake03g318200 |
| Inversion | Chr3 | 31375790 | 31376243 | OsKitaake03g330800 |
| Inversion | Chr1 | 32770630 | 32770852 | OsKitaake01g332700 |
| Inversion | Chr4 | 34659374 | 34659709 | |
| Inversion | Chr3 | 36766323 | 36766604 | OsKitaake03g409900 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 3995323 | Chr1 | 2005504 | |
| Translocation | Chr11 | 4001412 | Chr4 | 19709318 | OsKitaake11g054701 |
| Translocation | Chr5 | 12324953 | Chr2 | 8073841 | OsKitaake05g097800 |
| Translocation | Chr5 | 12484429 | Chr2 | 8048255 | |
| Translocation | Chr4 | 19709302 | Chr1 | 2007074 | |
| Translocation | Chr4 | 29398060 | Chr2 | 8041675 | OsKitaake02g103200 |