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| Mutant Information |
|---|
| Mutant Name | FN2001-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2001-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 173309 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 10388062 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 18862737 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 21313540 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 35050419 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 24905766 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31279524 | T-C | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 2251811 | A-T | Homo | INTRON | |
| SBS | Chr3 | 6969728 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 8941801 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 20211963 | T-G | Hetero | INTRON | |
| SBS | Chr3 | 21382679 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 5456471 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18988611 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6843190 | C-T | Homo | INTRON | |
| SBS | Chr6 | 12829784 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 14724364 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 16965949 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 30992231 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 14798011 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 1308683 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 2052603 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 2052604 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14692379 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 2867896 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 18445611 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 11566292 | C-A | Hetero | INTRON | |
| SBS | Chr12 | 13161269 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 23328006 | G-A | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 18326 | 18327 | 1 | |
| Deletion | Chr3 | 52182 | 52184 | 2 | |
| Deletion | Chr11 | 457919 | 457920 | 1 | |
| Deletion | Chr5 | 1788733 | 1788737 | 4 | |
| Deletion | Chr10 | 5286321 | 5286689 | 368 | OsKitaake10g037801 |
| Deletion | Chr5 | 5949950 | 5949952 | 2 | |
| Deletion | Chr6 | 7838572 | 7838783 | 211 | OsKitaake06g100000 |
| Deletion | Chr11 | 12463451 | 12463476 | 25 | |
| Deletion | Chr2 | 13094657 | 13094730 | 73 | |
| Deletion | Chr7 | 14087429 | 14087431 | 2 | |
| Deletion | Chr7 | 15932000 | 15932001 | 1 | |
| Deletion | Chr7 | 16178880 | 16178883 | 3 | |
| Deletion | Chr5 | 22553233 | 22553243 | 10 | |
| Deletion | Chr6 | 22645079 | 22645084 | 5 | OsKitaake06g199800 |
| Deletion | Chr1 | 22725741 | 22725742 | 1 | |
| Deletion | Chr4 | 25103411 | 25103423 | 12 | |
| Deletion | Chr3 | 29757710 | 29757713 | 3 | |
| Deletion | Chr4 | 31012975 | 31012976 | 1 | |
| Deletion | Chr4 | 35373859 | 35373861 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 14077817 | 14077820 | 2 | |
| Insertion | Chr5 | 15149474 | 15149477 | 2 | |
| Insertion | Chr6 | 167322 | 167327 | 4 | |
| Insertion | Chr5 | 9944344 | 9944346 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 9621481 | 9621799 | |
| Inversion | Chr12 | 9771321 | 9949523 | |
| Inversion | Chr2 | 30584406 | 31279693 | 2 |
| Inversion | Chr2 | 30584414 | 31279701 | 2 |