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Mutant Information

Mutant Name	FN2007-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2007-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1483189 C-T Homo INTERGENIC
SBS Chr1 10233120 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 20465028 G-T Hetero INTRON
SBS Chr1 31079445 A-T Homo INTERGENIC
SBS Chr2 18006492 G-T Hetero INTERGENIC
SBS Chr2 20649273 C-T Hetero INTERGENIC
SBS Chr3 7089849 C-A Hetero INTERGENIC
SBS Chr3 19544868 T-C Hetero INTERGENIC
SBS Chr3 20771157 C-T Hetero INTERGENIC
SBS Chr3 30993570 C-A Hetero INTERGENIC
SBS Chr4 6720877 C-A Homo INTERGENIC
SBS Chr4 6720879 G-C Homo INTERGENIC
SBS Chr4 7673643 T-A Homo INTERGENIC
SBS Chr4 13495016 C-T Homo INTERGENIC
SBS Chr4 22609366 T-C Hetero INTRON
SBS Chr4 22685009 A-G Hetero SYNONYMOUS_CODING
SBS Chr4 36778271 G-A Homo INTRON
SBS Chr5 6105765 T-G Hetero INTERGENIC
SBS Chr5 26928368 C-T Homo UTR_3_PRIME
SBS Chr5 30122802 G-C Hetero INTERGENIC
SBS Chr6 13761168 C-T Hetero INTERGENIC
SBS Chr6 17244557 A-G Hetero INTERGENIC
SBS Chr7 3041682 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 3041684 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g038200
SBS Chr7 8901098 G-A Hetero INTERGENIC
SBS Chr7 20152278 G-A Hetero INTERGENIC
SBS Chr9 9692588 A-C Homo INTRON
SBS Chr10 14373658 C-A Homo INTERGENIC
SBS Chr12 12025062 C-A Hetero INTERGENIC
SBS Chr12 15842236 A-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 88990 88991 1
Deletion Chr1 1127901 1127902 1
Deletion Chr4 3671192 3671196 4
Deletion Chr1 4636143 4636145 2
Deletion Chr8 4979658 4979659 1
Deletion Chr7 5403198 5403213 15
Deletion Chr1 11848762 11848855 93
Deletion Chr5 16641001 16689000 47999 3
Deletion Chr9 16846413 16846418 5
Deletion Chr12 17706566 17706567 1
Deletion Chr11 18093947 18094315 368
Deletion Chr12 20358114 20358115 1
Deletion Chr5 22262454 22262771 317 OsKitaake05g182000
Deletion Chr2 30552637 30552708 71

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30717138 30717141 2
Insertion Chr1 42367388 42367391 2
Insertion Chr2 29410767 29410770 2
Insertion Chr6 12650871 12650874 2
Insertion Chr9 20216932 20216935 2
Insertion Chr10 4427109 4427111 1
Insertion Chr12 11658594 11658596 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 2097462 3055094 2
Inversion Chr12 13131031 13678159

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 12014228 Chr4 33907524 OsKitaake12g104900
Translocation Chr12 12014235 Chr4 33914933 OsKitaake12g104900
Translocation Chr5 23300382 Chr2 2097456 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1483189	C-T	Homo	INTERGENIC
SBS	Chr1	10233120	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	20465028	G-T	Hetero	INTRON
SBS	Chr1	31079445	A-T	Homo	INTERGENIC
SBS	Chr2	18006492	G-T	Hetero	INTERGENIC
SBS	Chr2	20649273	C-T	Hetero	INTERGENIC
SBS	Chr3	7089849	C-A	Hetero	INTERGENIC
SBS	Chr3	19544868	T-C	Hetero	INTERGENIC
SBS	Chr3	20771157	C-T	Hetero	INTERGENIC
SBS	Chr3	30993570	C-A	Hetero	INTERGENIC
SBS	Chr4	6720877	C-A	Homo	INTERGENIC
SBS	Chr4	6720879	G-C	Homo	INTERGENIC
SBS	Chr4	7673643	T-A	Homo	INTERGENIC
SBS	Chr4	13495016	C-T	Homo	INTERGENIC
SBS	Chr4	22609366	T-C	Hetero	INTRON
SBS	Chr4	22685009	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr4	36778271	G-A	Homo	INTRON
SBS	Chr5	6105765	T-G	Hetero	INTERGENIC
SBS	Chr5	26928368	C-T	Homo	UTR_3_PRIME
SBS	Chr5	30122802	G-C	Hetero	INTERGENIC
SBS	Chr6	13761168	C-T	Hetero	INTERGENIC
SBS	Chr6	17244557	A-G	Hetero	INTERGENIC
SBS	Chr7	3041682	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	3041684	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g038200
SBS	Chr7	8901098	G-A	Hetero	INTERGENIC
SBS	Chr7	20152278	G-A	Hetero	INTERGENIC
SBS	Chr9	9692588	A-C	Homo	INTRON
SBS	Chr10	14373658	C-A	Homo	INTERGENIC
SBS	Chr12	12025062	C-A	Hetero	INTERGENIC
SBS	Chr12	15842236	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	88990	88991	1
Deletion	Chr1	1127901	1127902	1
Deletion	Chr4	3671192	3671196	4
Deletion	Chr1	4636143	4636145	2
Deletion	Chr8	4979658	4979659	1
Deletion	Chr7	5403198	5403213	15
Deletion	Chr1	11848762	11848855	93
Deletion	Chr5	16641001	16689000	47999	3
Deletion	Chr9	16846413	16846418	5
Deletion	Chr12	17706566	17706567	1
Deletion	Chr11	18093947	18094315	368
Deletion	Chr12	20358114	20358115	1
Deletion	Chr5	22262454	22262771	317	OsKitaake05g182000
Deletion	Chr2	30552637	30552708	71

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2097462	3055094	2
Inversion	Chr12	13131031	13678159

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes