Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2009-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2009-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 45
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2758917 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 4372127 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 20545211 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29025945 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9036249 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 19942480 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 19942483 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 28483147 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 7116007 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 13659546 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 18583470 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 20212111 | G-A | Homo | INTRON | |
| SBS | Chr3 | 24155917 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 27299888 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 2870102 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11264777 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11613310 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13192592 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 17029006 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 25528042 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 25666492 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g178300 |
| SBS | Chr4 | 27170402 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 34308757 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34308758 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 8914368 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 28110285 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 12776326 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 14248056 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 24770097 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26545506 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9738813 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 10340964 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20827585 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 1770949 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 3031064 | A-C | Hetero | INTRON | |
| SBS | Chr8 | 13648003 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23247904 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 26956645 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7181232 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 19423344 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20337724 | C-A | Homo | INTRON | |
| SBS | Chr10 | 20874542 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 5259919 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 28385118 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 4771252 | C-A | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3508598 | 3508605 | 7 | |
| Deletion | Chr9 | 3729333 | 3729338 | 5 | |
| Deletion | Chr7 | 7466866 | 7466867 | 1 | |
| Deletion | Chr8 | 7747410 | 7747412 | 2 | |
| Deletion | Chr9 | 7767493 | 7767498 | 5 | |
| Deletion | Chr8 | 8935237 | 8935242 | 5 | |
| Deletion | Chr7 | 15071817 | 15071823 | 6 | |
| Deletion | Chr2 | 15164402 | 15164411 | 9 | |
| Deletion | Chr4 | 15814238 | 15814244 | 6 | |
| Deletion | Chr8 | 18060544 | 18060545 | 1 | |
| Deletion | Chr2 | 18888614 | 18888621 | 7 | |
| Deletion | Chr10 | 21118552 | 21118562 | 10 | |
| Deletion | Chr5 | 24835001 | 25029000 | 193999 | 15 |
| Deletion | Chr4 | 26863001 | 26900000 | 36999 | 7 |
| Deletion | Chr11 | 27301511 | 27301512 | 1 | |
| Deletion | Chr1 | 42733001 | 42757000 | 23999 | OsKitaake01g471100 |
Insertions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 26680992 | 26680996 | 3 | |
| Insertion | Chr1 | 44159912 | 44159919 | 6 | OsKitaake01g493050  |
| Insertion | Chr7 | 10420352 | 10420355 | 2 | |
| Insertion | Chr7 | 20575258 | 20575261 | 2 | |
| Insertion | Chr9 | 20264762 | 20264765 | 2 | |
| Insertion | Chr12 | 8919811 | 8919814 | 2 | |
| Insertion | Chr5 | 30226359 | 30226361 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4053910 | 4054376 | |
| Inversion | Chr3 | 4563018 | 4563490 | OsKitaake03g065800 |
| Inversion | Chr8 | 9359789 | 9557638 | |
| Inversion | Chr8 | 9359795 | 9557659 | |
| Inversion | Chr11 | 16714780 | 16715011 | |
| Inversion | Chr9 | 21047687 | 21048225 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 13582645 | Chr4 | 9661015 |