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Mutant Information

Mutant Name	FN2016-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2016-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22585870 G-T Homo INTERGENIC
SBS Chr1 31209302 C-T Homo UTR_3_PRIME
SBS Chr1 39618338 T-C Homo INTERGENIC
SBS Chr2 4102556 G-T Hetero UTR_3_PRIME
SBS Chr2 5798832 C-G Hetero INTRON
SBS Chr2 5799062 T-G Hetero INTRON
SBS Chr2 16887554 G-A Homo INTERGENIC
SBS Chr3 9518288 C-A Homo INTERGENIC
SBS Chr3 10387966 T-A Homo INTRON
SBS Chr3 21336160 G-T Homo INTERGENIC
SBS Chr3 36423974 A-G Homo INTERGENIC
SBS Chr4 18556318 C-G Homo INTRON
SBS Chr4 29483212 C-A Hetero INTERGENIC
SBS Chr5 11775388 A-G Hetero INTERGENIC
SBS Chr7 3959934 C-T Hetero INTERGENIC
SBS Chr7 7860783 C-T Hetero INTERGENIC
SBS Chr7 12979401 C-G Hetero INTERGENIC
SBS Chr7 26791686 T-A Homo INTERGENIC
SBS Chr8 3455711 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g038700
SBS Chr8 9985623 G-A Hetero INTERGENIC
SBS Chr9 11383796 G-A Homo INTERGENIC
SBS Chr9 17829900 G-C Homo INTERGENIC
SBS Chr9 20757886 G-A Homo INTERGENIC
SBS Chr10 5261154 C-A Homo INTERGENIC
SBS Chr10 6156439 C-T Homo INTERGENIC
SBS Chr11 3153975 C-A Homo INTERGENIC
SBS Chr11 24597946 T-C Homo INTERGENIC
SBS Chr12 13335057 T-C Hetero INTRON

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 40845 40846 1
Deletion Chr10 2696001 2786000 89999 8
Deletion Chr10 3618492 3618493 1
Deletion Chr6 6668407 6668408 1
Deletion Chr11 7166852 7166858 6
Deletion Chr10 11187001 11395000 207999 13
Deletion Chr10 11580001 11642000 61999 3
Deletion Chr5 12515860 12515861 1
Deletion Chr12 14848535 14848537 2
Deletion Chr11 15653675 15653683 8
Deletion Chr9 15656901 15656902 1
Deletion Chr11 17316972 17316980 8
Deletion Chr11 21484598 21484613 15
Deletion Chr11 22389019 22389031 12
Deletion Chr1 25287957 25287966 9
Deletion Chr1 25656181 25656184 3 OsKitaake01g249200
Deletion Chr2 26957473 26957482 9
Deletion Chr4 27388303 27388304 1
Deletion Chr6 28253032 28253034 2
Deletion Chr11 29577001 29739000 161999 22

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13125806 13125809 2
Insertion Chr3 23419542 23419545 2
Insertion Chr4 3402446 3402449 2
Insertion Chr5 17866340 17866344 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 31769053 32142515 2
Inversion Chr4 31769079 32142523 2
Inversion Chr4 34904437 35127822 2
Inversion Chr4 34904438 35127827 2
Inversion Chr1 40506695 40603943 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2784025 Chr1 40506701 OsKitaake01g440000
Translocation Chr10 2784178 Chr1 40603943 OsKitaake01g441100
Translocation Chr12 26860448 Chr11 29583848

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22585870	G-T	Homo	INTERGENIC
SBS	Chr1	31209302	C-T	Homo	UTR_3_PRIME
SBS	Chr1	39618338	T-C	Homo	INTERGENIC
SBS	Chr2	4102556	G-T	Hetero	UTR_3_PRIME
SBS	Chr2	5798832	C-G	Hetero	INTRON
SBS	Chr2	5799062	T-G	Hetero	INTRON
SBS	Chr2	16887554	G-A	Homo	INTERGENIC
SBS	Chr3	9518288	C-A	Homo	INTERGENIC
SBS	Chr3	10387966	T-A	Homo	INTRON
SBS	Chr3	21336160	G-T	Homo	INTERGENIC
SBS	Chr3	36423974	A-G	Homo	INTERGENIC
SBS	Chr4	18556318	C-G	Homo	INTRON
SBS	Chr4	29483212	C-A	Hetero	INTERGENIC
SBS	Chr5	11775388	A-G	Hetero	INTERGENIC
SBS	Chr7	3959934	C-T	Hetero	INTERGENIC
SBS	Chr7	7860783	C-T	Hetero	INTERGENIC
SBS	Chr7	12979401	C-G	Hetero	INTERGENIC
SBS	Chr7	26791686	T-A	Homo	INTERGENIC
SBS	Chr8	3455711	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g038700
SBS	Chr8	9985623	G-A	Hetero	INTERGENIC
SBS	Chr9	11383796	G-A	Homo	INTERGENIC
SBS	Chr9	17829900	G-C	Homo	INTERGENIC
SBS	Chr9	20757886	G-A	Homo	INTERGENIC
SBS	Chr10	5261154	C-A	Homo	INTERGENIC
SBS	Chr10	6156439	C-T	Homo	INTERGENIC
SBS	Chr11	3153975	C-A	Homo	INTERGENIC
SBS	Chr11	24597946	T-C	Homo	INTERGENIC
SBS	Chr12	13335057	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	40845	40846	1
Deletion	Chr10	2696001	2786000	89999	8
Deletion	Chr10	3618492	3618493	1
Deletion	Chr6	6668407	6668408	1
Deletion	Chr11	7166852	7166858	6
Deletion	Chr10	11187001	11395000	207999	13
Deletion	Chr10	11580001	11642000	61999	3
Deletion	Chr5	12515860	12515861	1
Deletion	Chr12	14848535	14848537	2
Deletion	Chr11	15653675	15653683	8
Deletion	Chr9	15656901	15656902	1
Deletion	Chr11	17316972	17316980	8
Deletion	Chr11	21484598	21484613	15
Deletion	Chr11	22389019	22389031	12
Deletion	Chr1	25287957	25287966	9
Deletion	Chr1	25656181	25656184	3	OsKitaake01g249200
Deletion	Chr2	26957473	26957482	9
Deletion	Chr4	27388303	27388304	1
Deletion	Chr6	28253032	28253034	2
Deletion	Chr11	29577001	29739000	161999	22

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	31769053	32142515	2
Inversion	Chr4	31769079	32142523	2
Inversion	Chr4	34904437	35127822	2
Inversion	Chr4	34904438	35127827	2
Inversion	Chr1	40506695	40603943	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes