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| Mutant Information |
|---|
| Mutant Name | FN2024-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2024-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 16
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 14015821 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20676107 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21508497 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 34732944 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 36278704 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 24244248 | C-T | Homo | INTRON | |
| SBS | Chr6 | 6500644 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 9707047 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20853553 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g172100 |
| SBS | Chr7 | 26603845 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 5437273 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 24765494 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 2147750 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 20557620 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 21877459 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 3394902 | G-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 3520998 | 3520999 | 1 | OsKitaake06g049300 |
| Deletion | Chr4 | 4007134 | 4007137 | 3 | |
| Deletion | Chr9 | 8327644 | 8327645 | 1 | |
| Deletion | Chr9 | 8779925 | 8780016 | 91 | |
| Deletion | Chr12 | 9317180 | 9317181 | 1 | |
| Deletion | Chr4 | 11077905 | 11077907 | 2 | |
| Deletion | Chr4 | 12370526 | 12370533 | 7 | |
| Deletion | Chr7 | 13721001 | 13730000 | 8999 | |
| Deletion | Chr8 | 13900402 | 13900415 | 13 | |
| Deletion | Chr1 | 16697551 | 16697554 | 3 | |
| Deletion | Chr11 | 17465001 | 17583000 | 117999 | 12 |
| Deletion | Chr7 | 18643647 | 18643659 | 12 | OsKitaake07g151600 |
| Deletion | Chr1 | 40979035 | 40979036 | 1 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 10603253 | 10603257 | 3 | |
| Insertion | Chr10 | 3686685 | 3686688 | 2 | |
| Insertion | Chr3 | 6885482 | 6885485 | 2 | OsKitaake03g097400  |
| Insertion | Chr6 | 17621 | 17623 | 1 | |
| Insertion | Chr11 | 18736078 | 18736082 | 3 |
Inversions: 52
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 101899 | 102349 | |
| Inversion | Chr9 | 414740 | 415004 | OsKitaake09g003200 |
| Inversion | Chr4 | 505110 | 505450 | |
| Inversion | Chr11 | 735899 | 736311 | |
| Inversion | Chr8 | 1163739 | 1163927 | |
| Inversion | Chr1 | 3764718 | 3765161 | |
| Inversion | Chr3 | 4892776 | 4893155 | OsKitaake03g070300 |
| Inversion | Chr6 | 6753981 | 6754265 | OsKitaake06g088000 |
| Inversion | Chr9 | 6861601 | 6861774 | |
| Inversion | Chr10 | 7432191 | 7432446 | OsKitaake10g048600 |
| Inversion | Chr9 | 7848421 | 7848929 | |
| Inversion | Chr4 | 8240408 | 8240583 | OsKitaake04g043000 |
| Inversion | Chr5 | 9707804 | 9708217 | |
| Inversion | Chr9 | 10097964 | 10098182 | OsKitaake09g061800 |
| Inversion | Chr11 | 10467029 | 10467403 | |
| Inversion | Chr2 | 10471649 | 10471920 | OsKitaake02g124500 |
| Inversion | Chr12 | 10956020 | 10956287 | OsKitaake12g101500 |
| Inversion | Chr2 | 11606201 | 11606424 | |
| Inversion | Chr1 | 12372333 | 12372581 | |
| Inversion | Chr11 | 12979602 | 12979863 | |
| Inversion | Chr2 | 13262434 | 13262818 | |
| Inversion | Chr9 | 13424225 | 13424548 | |
| Inversion | Chr2 | 14050580 | 14050690 | |
| Inversion | Chr10 | 14538990 | 14539201 | OsKitaake10g091100 |
| Inversion | Chr4 | 15352166 | 15352402 | |
| Inversion | Chr4 | 16498024 | 16498170 | OsKitaake04g080300 |
| Inversion | Chr3 | 16569351 | 16569579 | |
| Inversion | Chr5 | 17394048 | 17394359 | |
| Inversion | Chr12 | 17779016 | 17779118 | |
| Inversion | Chr1 | 18331250 | 18331540 | OsKitaake01g183900 |
| Inversion | Chr1 | 18510299 | 18510687 | |
| Inversion | Chr6 | 18850263 | 18850580 | OsKitaake06g170600 |
| Inversion | Chr11 | 19888121 | 19888334 | |
| Inversion | Chr3 | 20890760 | 20891085 | OsKitaake03g232600 |
| Inversion | Chr7 | 21487450 | 21487642 | OsKitaake07g178800 |
| Inversion | Chr6 | 22687339 | 22687491 | |
| Inversion | Chr1 | 23742870 | 23743127 | OsKitaake01g227900 |
| Inversion | Chr12 | 24627464 | 24627785 | OsKitaake12g199800 |
| Inversion | Chr6 | 24772924 | 24773153 | |
| Inversion | Chr7 | 25303785 | 25304118 | OsKitaake07g228950 |
| Inversion | Chr1 | 26266933 | 26267214 | |
| Inversion | Chr8 | 26987809 | 26988126 | |
| Inversion | Chr5 | 28267320 | 28267466 | OsKitaake05g262600 |
| Inversion | Chr8 | 28612131 | 28612395 | OsKitaake08g245300 |
| Inversion | Chr3 | 29389951 | 29483582 | OsKitaake03g306600 |
| Inversion | Chr3 | 29389955 | 29483592 | OsKitaake03g306600 |
| Inversion | Chr3 | 32120510 | 32120663 | OsKitaake03g340400 |
| Inversion | Chr1 | 32713233 | 32713478 | |
| Inversion | Chr2 | 36637118 | 36637304 | |
| Inversion | Chr1 | 37090823 | 37091223 | OsKitaake01g395400 |
| Inversion | Chr1 | 39465838 | 39465942 | |
| Inversion | Chr1 | 43860381 | 43860782 |