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Mutant Information

Mutant Name	FN2042-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2042-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28011246 T-A Hetero INTRON
SBS Chr1 34653485 T-C Homo INTERGENIC
SBS Chr2 5844802 A-T Hetero INTERGENIC
SBS Chr2 13018449 G-A Homo INTERGENIC
SBS Chr2 20611045 T-C Homo INTERGENIC
SBS Chr2 27022244 T-G Homo INTERGENIC
SBS Chr2 34081150 C-T Homo INTERGENIC
SBS Chr2 34710148 T-G Homo SYNONYMOUS_CODING
SBS Chr3 4755222 C-A Hetero INTERGENIC
SBS Chr3 11370691 A-T Homo SPLICE_SITE_REGION
SBS Chr3 19411427 C-A Hetero INTERGENIC
SBS Chr4 6451137 A-G Hetero INTERGENIC
SBS Chr4 13426319 C-G Hetero INTERGENIC
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr4 17869102 C-T Hetero INTERGENIC
SBS Chr4 18309447 A-C Hetero INTERGENIC
SBS Chr5 12015861 C-T Homo INTERGENIC
SBS Chr5 14723067 C-T Hetero INTERGENIC
SBS Chr6 3525857 G-A Hetero INTERGENIC
SBS Chr7 18918454 G-T Homo SYNONYMOUS_CODING
SBS Chr7 18924593 T-C Homo INTERGENIC
SBS Chr7 19037345 C-T Homo INTERGENIC
SBS Chr8 849172 A-G Hetero INTERGENIC
SBS Chr8 2376836 T-C Hetero INTERGENIC
SBS Chr8 9023869 C-T Homo INTERGENIC
SBS Chr10 8395455 T-C Hetero INTERGENIC
SBS Chr10 9202207 T-C Hetero INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr11 937358 G-A Hetero INTERGENIC
SBS Chr11 9342325 T-A Hetero INTERGENIC
SBS Chr12 5286087 A-T Hetero INTERGENIC
SBS Chr12 12094285 T-A Homo INTRON
SBS Chr12 12599568 A-T Homo INTRON
SBS Chr12 12628437 C-T Homo INTERGENIC
SBS Chr12 12628438 A-T Homo INTERGENIC
SBS Chr12 12883197 G-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 374368 374379 11 OsKitaake03g005300
Deletion Chr2 1588001 1605000 16999 4
Deletion Chr9 2345302 2345311 9 OsKitaake09g012200
Deletion Chr12 8382819 8382821 2
Deletion Chr12 12120361 12120363 2
Deletion Chr10 12257001 12886000 628999 62
Deletion Chr12 12642580 12642583 3
Deletion Chr4 14688001 14753000 64999 2
Deletion Chr12 15521039 15521050 11
Deletion Chr12 15589102 15589116 14
Deletion Chr12 15813298 15813299 1
Deletion Chr6 18528564 18528566 2
Deletion Chr10 18555564 18555569 5
Deletion Chr7 19150291 19150300 9
Deletion Chr4 21241967 21241976 9
Deletion Chr1 21500001 21521000 20999
Deletion Chr7 23711459 23711460 1
Deletion Chr5 25500085 25500097 12 OsKitaake05g223100
Deletion Chr3 35545242 35545246 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 30188951 30188954 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 9792401 9880661 OsKitaake10g057700
Inversion Chr9 11386211 11645649 OsKitaake09g074100

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 3295181 Chr2 1588450 OsKitaake06g045900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28011246	T-A	Hetero	INTRON
SBS	Chr1	34653485	T-C	Homo	INTERGENIC
SBS	Chr2	5844802	A-T	Hetero	INTERGENIC
SBS	Chr2	13018449	G-A	Homo	INTERGENIC
SBS	Chr2	20611045	T-C	Homo	INTERGENIC
SBS	Chr2	27022244	T-G	Homo	INTERGENIC
SBS	Chr2	34081150	C-T	Homo	INTERGENIC
SBS	Chr2	34710148	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr3	4755222	C-A	Hetero	INTERGENIC
SBS	Chr3	11370691	A-T	Homo	SPLICE_SITE_REGION
SBS	Chr3	19411427	C-A	Hetero	INTERGENIC
SBS	Chr4	6451137	A-G	Hetero	INTERGENIC
SBS	Chr4	13426319	C-G	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr4	17869102	C-T	Hetero	INTERGENIC
SBS	Chr4	18309447	A-C	Hetero	INTERGENIC
SBS	Chr5	12015861	C-T	Homo	INTERGENIC
SBS	Chr5	14723067	C-T	Hetero	INTERGENIC
SBS	Chr6	3525857	G-A	Hetero	INTERGENIC
SBS	Chr7	18918454	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	18924593	T-C	Homo	INTERGENIC
SBS	Chr7	19037345	C-T	Homo	INTERGENIC
SBS	Chr8	849172	A-G	Hetero	INTERGENIC
SBS	Chr8	2376836	T-C	Hetero	INTERGENIC
SBS	Chr8	9023869	C-T	Homo	INTERGENIC
SBS	Chr10	8395455	T-C	Hetero	INTERGENIC
SBS	Chr10	9202207	T-C	Hetero	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr11	937358	G-A	Hetero	INTERGENIC
SBS	Chr11	9342325	T-A	Hetero	INTERGENIC
SBS	Chr12	5286087	A-T	Hetero	INTERGENIC
SBS	Chr12	12094285	T-A	Homo	INTRON
SBS	Chr12	12599568	A-T	Homo	INTRON
SBS	Chr12	12628437	C-T	Homo	INTERGENIC
SBS	Chr12	12628438	A-T	Homo	INTERGENIC
SBS	Chr12	12883197	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	374368	374379	11	OsKitaake03g005300
Deletion	Chr2	1588001	1605000	16999	4
Deletion	Chr9	2345302	2345311	9	OsKitaake09g012200
Deletion	Chr12	8382819	8382821	2
Deletion	Chr12	12120361	12120363	2
Deletion	Chr10	12257001	12886000	628999	62
Deletion	Chr12	12642580	12642583	3
Deletion	Chr4	14688001	14753000	64999	2
Deletion	Chr12	15521039	15521050	11
Deletion	Chr12	15589102	15589116	14
Deletion	Chr12	15813298	15813299	1
Deletion	Chr6	18528564	18528566	2
Deletion	Chr10	18555564	18555569	5
Deletion	Chr7	19150291	19150300	9
Deletion	Chr4	21241967	21241976	9
Deletion	Chr1	21500001	21521000	20999
Deletion	Chr7	23711459	23711460	1
Deletion	Chr5	25500085	25500097	12	OsKitaake05g223100
Deletion	Chr3	35545242	35545246	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9792401	9880661	OsKitaake10g057700
Inversion	Chr9	11386211	11645649	OsKitaake09g074100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes