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Mutant Information

Mutant Name	FN2044-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2044-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20744279 A-G Hetero INTERGENIC
SBS Chr1 29057158 C-G Hetero INTERGENIC
SBS Chr2 82569 C-T Homo INTERGENIC
SBS Chr2 10733668 C-G Hetero INTERGENIC
SBS Chr2 11476635 C-T Homo INTERGENIC
SBS Chr2 27060541 G-A Homo INTERGENIC
SBS Chr2 31991989 C-G Hetero INTERGENIC
SBS Chr3 19626093 G-A Homo INTERGENIC
SBS Chr3 30712817 A-C Hetero INTERGENIC
SBS Chr3 33368373 T-C Hetero INTRON
SBS Chr4 1606536 G-A Homo INTERGENIC
SBS Chr4 7857414 G-T Hetero INTERGENIC
SBS Chr4 15021733 G-A Hetero INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr4 21531424 C-T Hetero INTERGENIC
SBS Chr4 25549630 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g176100
SBS Chr4 26228522 G-T Hetero INTERGENIC
SBS Chr5 3140595 C-T Hetero INTERGENIC
SBS Chr5 8438837 G-T Homo INTERGENIC
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr5 25493774 T-C Hetero UTR_3_PRIME
SBS Chr6 13270171 T-A Hetero INTERGENIC
SBS Chr6 19836266 G-A Homo INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr7 17560318 G-A Hetero INTERGENIC
SBS Chr7 18625661 G-T Hetero INTERGENIC
SBS Chr7 19022316 A-C Hetero INTERGENIC
SBS Chr8 13003402 C-T Hetero INTERGENIC
SBS Chr9 2529248 T-C Hetero INTERGENIC
SBS Chr9 7943437 T-A Hetero INTERGENIC
SBS Chr9 13838946 T-A Hetero INTRON
SBS Chr10 2197015 G-A Homo SYNONYMOUS_CODING
SBS Chr10 3485124 G-A Homo SYNONYMOUS_CODING
SBS Chr10 14190901 G-A Hetero INTERGENIC
SBS Chr10 18464045 C-A Homo INTERGENIC
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr12 5300331 C-T Hetero INTERGENIC
SBS Chr12 10878268 C-A Homo INTERGENIC
SBS Chr12 15491140 A-G Homo INTERGENIC
SBS Chr12 19324372 A-T Homo INTRON

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 15154 15155 1
Deletion Chr8 2469535 2469620 85
Deletion Chr8 5229687 5229689 2
Deletion Chr9 12740001 12764000 23999 2
Deletion Chr11 20248712 20248713 1
Deletion Chr3 22614663 22614665 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 25793868 25793871 2
Insertion Chr7 11984659 11984661 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 12733589 Chr2 36678156 OsKitaake02g391200
Translocation Chr9 12739370 Chr2 36678150 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20744279	A-G	Hetero	INTERGENIC
SBS	Chr1	29057158	C-G	Hetero	INTERGENIC
SBS	Chr2	82569	C-T	Homo	INTERGENIC
SBS	Chr2	10733668	C-G	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Homo	INTERGENIC
SBS	Chr2	27060541	G-A	Homo	INTERGENIC
SBS	Chr2	31991989	C-G	Hetero	INTERGENIC
SBS	Chr3	19626093	G-A	Homo	INTERGENIC
SBS	Chr3	30712817	A-C	Hetero	INTERGENIC
SBS	Chr3	33368373	T-C	Hetero	INTRON
SBS	Chr4	1606536	G-A	Homo	INTERGENIC
SBS	Chr4	7857414	G-T	Hetero	INTERGENIC
SBS	Chr4	15021733	G-A	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr4	21531424	C-T	Hetero	INTERGENIC
SBS	Chr4	25549630	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g176100
SBS	Chr4	26228522	G-T	Hetero	INTERGENIC
SBS	Chr5	3140595	C-T	Hetero	INTERGENIC
SBS	Chr5	8438837	G-T	Homo	INTERGENIC
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr5	25493774	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	13270171	T-A	Hetero	INTERGENIC
SBS	Chr6	19836266	G-A	Homo	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr7	17560318	G-A	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Hetero	INTERGENIC
SBS	Chr7	19022316	A-C	Hetero	INTERGENIC
SBS	Chr8	13003402	C-T	Hetero	INTERGENIC
SBS	Chr9	2529248	T-C	Hetero	INTERGENIC
SBS	Chr9	7943437	T-A	Hetero	INTERGENIC
SBS	Chr9	13838946	T-A	Hetero	INTRON
SBS	Chr10	2197015	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	3485124	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	14190901	G-A	Hetero	INTERGENIC
SBS	Chr10	18464045	C-A	Homo	INTERGENIC
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr12	5300331	C-T	Hetero	INTERGENIC
SBS	Chr12	10878268	C-A	Homo	INTERGENIC
SBS	Chr12	15491140	A-G	Homo	INTERGENIC
SBS	Chr12	19324372	A-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	15154	15155	1
Deletion	Chr8	2469535	2469620	85
Deletion	Chr8	5229687	5229689	2
Deletion	Chr9	12740001	12764000	23999	2
Deletion	Chr11	20248712	20248713	1
Deletion	Chr3	22614663	22614665	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	12733589	Chr2	36678156	OsKitaake02g391200
Translocation	Chr9	12739370	Chr2	36678150	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes