Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2046-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2046-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16398504 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 21061314 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 27140369 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 4185315 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 5325334 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 23647748 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 28104340 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 30949281 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 10259 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 35989877 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 36699763 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6517101 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16231578 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 21177857 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 13183400 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 17779309 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 23975457 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4214791 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6067512 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8195401 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 8200145 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 19798876 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28627825 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 2193405 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 14857660 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18900350 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 4511836 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 5743755 | G-T | Homo | INTRON | |
| SBS | Chr12 | 5743758 | A-T | Homo | INTRON | |
| SBS | Chr12 | 5743759 | G-T | Homo | INTRON |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 8155361 | 8155367 | 6 | OsKitaake03g112900 |
| Deletion | Chr12 | 11345855 | 11345859 | 4 | |
| Deletion | Chr1 | 12389211 | 12389219 | 8 | |
| Deletion | Chr9 | 14146988 | 14146993 | 5 | |
| Deletion | Chr2 | 19848624 | 19848629 | 5 | |
| Deletion | Chr5 | 23634815 | 23634832 | 17 | OsKitaake05g206700 |
| Deletion | Chr7 | 26234840 | 26234841 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 11527814 | 11527818 | 3 | |
| Insertion | Chr6 | 24954 | 24957 | 2 | |
| Insertion | Chr11 | 11259765 | 11259768 | 2 | OsKitaake11g107900  |
Inversions: 189
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 24336 | 24703 | OsKitaake12g000100 |
| Inversion | Chr12 | 52510 | 52685 | |
| Inversion | Chr12 | 58711 | 59170 | |
| Inversion | Chr12 | 84896 | 85061 | |
| Inversion | Chr5 | 213796 | 214029 | |
| Inversion | Chr3 | 770555 | 770897 | |
| Inversion | Chr7 | 821650 | 821826 | OsKitaake07g010300 |
| Inversion | Chr5 | 956917 | 957282 | |
| Inversion | Chr8 | 1209302 | 1209550 | |
| Inversion | Chr11 | 1281192 | 1281447 | OsKitaake11g015700 |
| Inversion | Chr11 | 1302010 | 1302347 | |
| Inversion | Chr10 | 1715728 | 1715954 | OsKitaake10g012000 |
| Inversion | Chr6 | 1786509 | 1786919 | |
| Inversion | Chr10 | 1801640 | 1802047 | OsKitaake10g013200 |
| Inversion | Chr9 | 1989421 | 1989619 | |
| Inversion | Chr12 | 2245254 | 2245359 | OsKitaake12g034800 |
| Inversion | Chr2 | 2289796 | 2290038 | |
| Inversion | Chr10 | 2455593 | 2455727 | OsKitaake10g019600 |
| Inversion | Chr6 | 3011531 | 3011775 | OsKitaake06g041500 |
| Inversion | Chr6 | 3330015 | 3330365 | |
| Inversion | Chr2 | 3333535 | 3333955 | |
| Inversion | Chr11 | 3495416 | 3495899 | |
| Inversion | Chr1 | 3549016 | 3549439 | OsKitaake01g047300 |
| Inversion | Chr11 | 3615194 | 3615584 | OsKitaake11g050000 |
| Inversion | Chr11 | 3658170 | 3658381 | OsKitaake11g050700 |
| Inversion | Chr11 | 3918762 | 3919066 | OsKitaake11g053900 |
| Inversion | Chr2 | 3931752 | 3932072 | OsKitaake02g056500 |
| Inversion | Chr11 | 4337377 | 4337820 | |
| Inversion | Chr9 | 4344532 | 4345026 | |
| Inversion | Chr4 | 5054163 | 5054583 | |
| Inversion | Chr7 | 5070220 | 5070467 | |
| Inversion | Chr5 | 5154090 | 5154429 | OsKitaake05g057500 |
| Inversion | Chr12 | 5216148 | 5216426 | |
| Inversion | Chr11 | 5219974 | 5220226 | |
| Inversion | Chr6 | 5396822 | 5397233 | |
| Inversion | Chr6 | 6468626 | 6468913 | |
| Inversion | Chr11 | 6472170 | 6472456 | OsKitaake11g076800 |
| Inversion | Chr8 | 6527354 | 6527677 | |
| Inversion | Chr4 | 6629017 | 6629392 | |
| Inversion | Chr6 | 6630811 | 6631158 | OsKitaake06g086800 |
| Inversion | Chr8 | 6694943 | 6695211 | |
| Inversion | Chr9 | 6848760 | 6848941 | |
| Inversion | Chr7 | 7075246 | 7075561 | |
| Inversion | Chr12 | 7192421 | 7192573 | |
| Inversion | Chr1 | 7276173 | 7276367 | |
| Inversion | Chr2 | 7301513 | 7302005 | |
| Inversion | Chr12 | 7326994 | 7327313 | OsKitaake12g080800 |
| Inversion | Chr11 | 7354038 | 7354228 | |
| Inversion | Chr2 | 7447936 | 7448202 | |
| Inversion | Chr5 | 7466637 | 7466767 | |
| Inversion | Chr8 | 7586951 | 7587218 | |
| Inversion | Chr11 | 7727744 | 7728040 | |
| Inversion | Chr2 | 7868649 | 7868890 | |
| Inversion | Chr11 | 8386185 | 8386696 | |
| Inversion | Chr11 | 8415640 | 8415977 | |
| Inversion | Chr11 | 8525246 | 8596598 | OsKitaake11g092500 |
| Inversion | Chr11 | 8596684 | 8670105 | |
| Inversion | Chr11 | 8732621 | 8732927 | |
| Inversion | Chr11 | 9204785 | 9204896 | OsKitaake11g096900 |
| Inversion | Chr11 | 9301024 | 9301282 | |
| Inversion | Chr3 | 9347310 | 9347606 | OsKitaake03g126900 |
| Inversion | Chr5 | 9499770 | 9499999 | |
| Inversion | Chr9 | 9695736 | 9696096 | OsKitaake09g058900 |
| Inversion | Chr3 | 9799731 | 9799899 | |
| Inversion | Chr11 | 9802013 | 9802267 | |
| Inversion | Chr1 | 10050457 | 10050627 | OsKitaake01g127100 |
| Inversion | Chr8 | 10133942 | 10134347 | |
| Inversion | Chr2 | 10563639 | 10563770 | |
| Inversion | Chr5 | 10621424 | 10621610 | |
| Inversion | Chr11 | 10890105 | 10890310 | |
| Inversion | Chr11 | 10912833 | 10912987 | |
| Inversion | Chr8 | 10941500 | 10941732 | |
| Inversion | Chr10 | 11107290 | 11107519 | |
| Inversion | Chr9 | 11121627 | 11121815 | |
| Inversion | Chr11 | 11183435 | 11183903 | |
| Inversion | Chr11 | 11247123 | 11247337 | |
| Inversion | Chr11 | 11357125 | 11357377 | |
| Inversion | Chr1 | 11950256 | 11950580 | |
| Inversion | Chr3 | 12182610 | 12183067 | |
| Inversion | Chr7 | 12202721 | 12203002 | |
| Inversion | Chr3 | 12384082 | 12384194 | OsKitaake03g166500 |
| Inversion | Chr8 | 12571321 | 12571627 | |
| Inversion | Chr2 | 12588659 | 12588765 | |
| Inversion | Chr12 | 12711131 | 12711394 | |
| Inversion | Chr11 | 12982462 | 12982723 | |
| Inversion | Chr2 | 13103355 | 13103732 | OsKitaake02g146001 |
| Inversion | Chr3 | 13139653 | 13139942 | |
| Inversion | Chr8 | 13191016 | 13191151 | OsKitaake08g110100 |
| Inversion | Chr4 | 13195530 | 13195631 | OsKitaake04g062500 |
| Inversion | Chr11 | 13672648 | 13672869 | |
| Inversion | Chr5 | 13676790 | 13677125 | |
| Inversion | Chr9 | 13812779 | 13812943 | |
| Inversion | Chr2 | 13946697 | 13946861 | |
| Inversion | Chr7 | 14245684 | 14246087 | |
| Inversion | Chr12 | 14502097 | 14502301 | |
| Inversion | Chr5 | 14747842 | 14748159 | OsKitaake05g112300 |
| Inversion | Chr12 | 14775984 | 14776240 | |
| Inversion | Chr8 | 14842552 | 14842671 | OsKitaake08g116200 |
| Inversion | Chr11 | 14968807 | 14968907 | |
| Inversion | Chr11 | 15021058 | 15021261 | OsKitaake11g123300 |
| Inversion | Chr3 | 15143570 | 15144044 | OsKitaake03g196300 |
| Inversion | Chr9 | 15162660 | 15162932 | |
| Inversion | Chr6 | 15489938 | 15490277 | |
| Inversion | Chr3 | 15622183 | 15622425 | OsKitaake03g200600 |
| Inversion | Chr1 | 15826439 | 15826659 | OsKitaake01g172600 |
| Inversion | Chr5 | 15939237 | 15939359 | |
| Inversion | Chr8 | 15971351 | 15971596 | |
| Inversion | Chr2 | 16012042 | 16012209 | OsKitaake02g165800 |
| Inversion | Chr11 | 16080409 | 16080541 | |
| Inversion | Chr11 | 16120313 | 16120526 | OsKitaake11g128950 |
| Inversion | Chr11 | 16122997 | 16123290 | OsKitaake11g128950 |
| Inversion | Chr4 | 16407608 | 16407816 | |
| Inversion | Chr3 | 16532926 | 16533189 | |
| Inversion | Chr4 | 16537223 | 16537347 | |
| Inversion | Chr4 | 16538588 | 16538946 | |
| Inversion | Chr11 | 16566712 | 16566946 | OsKitaake11g131400 |
| Inversion | Chr5 | 16628417 | 16628523 | |
| Inversion | Chr11 | 16813403 | 16813733 | |
| Inversion | Chr4 | 16821482 | 16821782 | |
| Inversion | Chr11 | 17004253 | 17004410 | OsKitaake11g132900 |
| Inversion | Chr6 | 17383568 | 17383954 | |
| Inversion | Chr2 | 17615533 | 17615825 | |
| Inversion | Chr7 | 17624274 | 17624477 | |
| Inversion | Chr6 | 18228399 | 18228791 | OsKitaake06g166900 |
| Inversion | Chr8 | 18270478 | 18270850 | |
| Inversion | Chr5 | 18513738 | 18513988 | |
| Inversion | Chr9 | 18528868 | 18529128 | |
| Inversion | Chr11 | 18661865 | 18662237 | |
| Inversion | Chr11 | 18665625 | 18665853 | |
| Inversion | Chr2 | 18679617 | 18679893 | OsKitaake02g183900 |
| Inversion | Chr7 | 18881088 | 18881390 | |
| Inversion | Chr11 | 19127713 | 19127961 | |
| Inversion | Chr11 | 19171313 | 19171558 | |
| Inversion | Chr10 | 19448714 | 19448819 | OsKitaake10g142300 |
| Inversion | Chr11 | 19455126 | 19455479 | |
| Inversion | Chr7 | 19821472 | 19821654 | |
| Inversion | Chr11 | 19893067 | 19893443 | |
| Inversion | Chr8 | 20134856 | 20135173 | |
| Inversion | Chr11 | 20210177 | 20210390 | |
| Inversion | Chr10 | 20238618 | 20239078 | |
| Inversion | Chr10 | 20499743 | 20500341 | |
| Inversion | Chr4 | 20576620 | 20576886 | |
| Inversion | Chr5 | 20610219 | 20610349 | |
| Inversion | Chr4 | 20672646 | 20673062 | |
| Inversion | Chr11 | 20918332 | 20918688 | |
| Inversion | Chr11 | 21052633 | 21052940 | |
| Inversion | Chr12 | 21105708 | 21106083 | |
| Inversion | Chr7 | 21287153 | 21287354 | |
| Inversion | Chr11 | 21351098 | 21351249 | |
| Inversion | Chr5 | 21882860 | 21883019 | |
| Inversion | Chr6 | 22789159 | 22789266 | |
| Inversion | Chr11 | 23974705 | 23974870 | |
| Inversion | Chr1 | 24109456 | 24109788 | OsKitaake01g231700 |
| Inversion | Chr12 | 24261522 | 24261890 | OsKitaake12g195200 |
| Inversion | Chr4 | 24338820 | 24339037 | |
| Inversion | Chr3 | 24900699 | 24900845 | |
| Inversion | Chr2 | 25346566 | 25346908 | |
| Inversion | Chr6 | 25471760 | 25471998 | OsKitaake06g226000 |
| Inversion | Chr2 | 25791487 | 25791620 | |
| Inversion | Chr11 | 26011570 | 26011991 | |
| Inversion | Chr5 | 26398050 | 26398224 | OsKitaake05g233300 |
| Inversion | Chr1 | 26688498 | 26688692 | |
| Inversion | Chr11 | 27013259 | 27013457 | OsKitaake11g219900 |
| Inversion | Chr2 | 27124083 | 27124266 | OsKitaake02g271000 |
| Inversion | Chr5 | 27313702 | 27314105 | |
| Inversion | Chr11 | 27334039 | 27334321 | |
| Inversion | Chr6 | 27576830 | 27577141 | OsKitaake06g249300 |
| Inversion | Chr4 | 27631878 | 27632228 | OsKitaake04g202900 |
| Inversion | Chr4 | 28438521 | 28438673 | |
| Inversion | Chr1 | 28484611 | 28485062 | OsKitaake01g276400 |
| Inversion | Chr1 | 28540330 | 28540670 | |
| Inversion | Chr6 | 28958744 | 28958982 | |
| Inversion | Chr8 | 29201863 | 29202059 | |
| Inversion | Chr3 | 29252089 | 29252599 | |
| Inversion | Chr6 | 29495213 | 29495348 | |
| Inversion | Chr4 | 29773292 | 29773398 | |
| Inversion | Chr3 | 30172901 | 30173120 | |
| Inversion | Chr3 | 31968176 | 31968373 | |
| Inversion | Chr1 | 32501204 | 32501494 | OsKitaake01g329400 |
| Inversion | Chr3 | 33183022 | 33183290 | |
| Inversion | Chr2 | 34893399 | 34893717 | |
| Inversion | Chr3 | 35367029 | 35367396 | OsKitaake03g387900 |
| Inversion | Chr2 | 35369223 | 35369554 | OsKitaake02g370600 |
| Inversion | Chr2 | 35427618 | 35427994 | |
| Inversion | Chr4 | 35947185 | 36700967 | OsKitaake04g308500 |
| Inversion | Chr2 | 36372082 | 36372234 | |
| Inversion | Chr1 | 37762687 | 37762916 | OsKitaake01g403100 |
| Inversion | Chr1 | 38176617 | 38177136 | OsKitaake01g407100 |
| Inversion | Chr1 | 41964551 | 41965005 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 4889434 | Chr4 | 36703382 | |
| Translocation | Chr5 | 4889436 | Chr4 | 36700976 | |
| Translocation | Chr11 | 8525251 | Chr3 | 2043689 | 2 |
| Translocation | Chr11 | 8525875 | Chr3 | 2043685 | OsKitaake03g029200 |