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Mutant Information

Mutant Name	FN2047-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2047-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9212847 T-C Hetero UTR_3_PRIME
SBS Chr1 23367944 T-A Hetero UTR_3_PRIME
SBS Chr2 4040203 T-G Hetero INTERGENIC
SBS Chr2 4883038 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g067500
SBS Chr2 4883039 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g067500
SBS Chr2 18015835 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g179400
SBS Chr2 18015844 C-A Homo SYNONYMOUS_CODING
SBS Chr2 19138887 G-A Homo INTERGENIC
SBS Chr2 19537513 C-T Homo INTERGENIC
SBS Chr2 22029416 G-A Homo INTERGENIC
SBS Chr3 12958617 C-A Homo INTERGENIC
SBS Chr3 27416782 T-C Hetero INTERGENIC
SBS Chr4 3442408 C-G Hetero INTERGENIC
SBS Chr4 14565645 G-A Homo INTERGENIC
SBS Chr4 15896299 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g076200
SBS Chr5 978790 A-T Homo INTERGENIC
SBS Chr5 1683225 C-T Hetero INTERGENIC
SBS Chr5 2974545 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 5481689 T-C Hetero INTERGENIC
SBS Chr5 14392378 A-T Homo INTERGENIC
SBS Chr6 5696402 T-A Homo INTRON
SBS Chr6 5696403 T-A Homo INTRON
SBS Chr6 11291544 G-A Hetero INTERGENIC
SBS Chr7 13868942 C-T Homo INTERGENIC
SBS Chr8 14725510 T-A Homo INTERGENIC
SBS Chr8 15989442 G-A Homo INTERGENIC
SBS Chr8 24040192 C-T Hetero INTERGENIC
SBS Chr8 24040193 A-T Hetero INTERGENIC
SBS Chr8 24104311 A-T Hetero INTERGENIC
SBS Chr9 317513 C-T Hetero INTERGENIC
SBS Chr9 1007689 C-G Hetero INTERGENIC
SBS Chr9 4803876 T-C Hetero INTERGENIC
SBS Chr9 15605285 C-G Hetero INTERGENIC
SBS Chr9 16607440 A-T Homo INTERGENIC
SBS Chr11 16835459 A-C Homo INTERGENIC
SBS Chr11 17889041 C-T Hetero INTERGENIC
SBS Chr12 3593191 G-C Hetero UTR_5_PRIME
SBS Chr12 4767677 C-T Hetero INTERGENIC
SBS Chr12 20486890 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 935507 935519 12
Deletion Chr4 2717817 2717819 2
Deletion Chr7 4610594 4610599 5
Deletion Chr7 6902605 6902607 2
Deletion Chr2 16664622 16664624 2
Deletion Chr5 19681795 19681797 2
Deletion Chr2 21899120 21899129 9
Deletion Chr7 25029417 25029418 1
Deletion Chr12 27023519 27023840 321
Deletion Chr1 34626483 34626486 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 18507813 18507816 2
Insertion Chr5 15424490 15424492 1 OsKitaake05g118300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 25066745 Chr5 25743310
Translocation Chr6 25066751 Chr5 25753152 OsKitaake05g226200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9212847	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	23367944	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	4040203	T-G	Hetero	INTERGENIC
SBS	Chr2	4883038	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g067500
SBS	Chr2	4883039	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g067500
SBS	Chr2	18015835	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g179400
SBS	Chr2	18015844	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	19138887	G-A	Homo	INTERGENIC
SBS	Chr2	19537513	C-T	Homo	INTERGENIC
SBS	Chr2	22029416	G-A	Homo	INTERGENIC
SBS	Chr3	12958617	C-A	Homo	INTERGENIC
SBS	Chr3	27416782	T-C	Hetero	INTERGENIC
SBS	Chr4	3442408	C-G	Hetero	INTERGENIC
SBS	Chr4	14565645	G-A	Homo	INTERGENIC
SBS	Chr4	15896299	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g076200
SBS	Chr5	978790	A-T	Homo	INTERGENIC
SBS	Chr5	1683225	C-T	Hetero	INTERGENIC
SBS	Chr5	2974545	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	5481689	T-C	Hetero	INTERGENIC
SBS	Chr5	14392378	A-T	Homo	INTERGENIC
SBS	Chr6	5696402	T-A	Homo	INTRON
SBS	Chr6	5696403	T-A	Homo	INTRON
SBS	Chr6	11291544	G-A	Hetero	INTERGENIC
SBS	Chr7	13868942	C-T	Homo	INTERGENIC
SBS	Chr8	14725510	T-A	Homo	INTERGENIC
SBS	Chr8	15989442	G-A	Homo	INTERGENIC
SBS	Chr8	24040192	C-T	Hetero	INTERGENIC
SBS	Chr8	24040193	A-T	Hetero	INTERGENIC
SBS	Chr8	24104311	A-T	Hetero	INTERGENIC
SBS	Chr9	317513	C-T	Hetero	INTERGENIC
SBS	Chr9	1007689	C-G	Hetero	INTERGENIC
SBS	Chr9	4803876	T-C	Hetero	INTERGENIC
SBS	Chr9	15605285	C-G	Hetero	INTERGENIC
SBS	Chr9	16607440	A-T	Homo	INTERGENIC
SBS	Chr11	16835459	A-C	Homo	INTERGENIC
SBS	Chr11	17889041	C-T	Hetero	INTERGENIC
SBS	Chr12	3593191	G-C	Hetero	UTR_5_PRIME
SBS	Chr12	4767677	C-T	Hetero	INTERGENIC
SBS	Chr12	20486890	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	935507	935519	12
Deletion	Chr4	2717817	2717819	2
Deletion	Chr7	4610594	4610599	5
Deletion	Chr7	6902605	6902607	2
Deletion	Chr2	16664622	16664624	2
Deletion	Chr5	19681795	19681797	2
Deletion	Chr2	21899120	21899129	9
Deletion	Chr7	25029417	25029418	1
Deletion	Chr12	27023519	27023840	321
Deletion	Chr1	34626483	34626486	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	25066745	Chr5	25743310
Translocation	Chr6	25066751	Chr5	25753152	OsKitaake05g226200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes