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Mutant Information

Mutant Name	FN2048-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2048-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5746683 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g073000
SBS Chr1 31102516 G-T Hetero INTERGENIC
SBS Chr1 32991277 C-T Hetero INTERGENIC
SBS Chr2 724685 G-T Homo INTERGENIC
SBS Chr2 33033820 G-A Hetero INTERGENIC
SBS Chr3 16999490 A-T Hetero INTERGENIC
SBS Chr4 3289146 T-G Hetero INTERGENIC
SBS Chr4 12401618 T-A Homo INTERGENIC
SBS Chr5 23606632 T-A Hetero INTERGENIC
SBS Chr6 988221 G-A Homo UTR_3_PRIME
SBS Chr6 13559418 A-T Homo INTERGENIC
SBS Chr6 13831659 T-A Homo INTERGENIC
SBS Chr6 21215316 T-C Hetero UTR_3_PRIME
SBS Chr6 21255826 A-T Hetero INTRON
SBS Chr7 4383263 G-C Hetero INTERGENIC
SBS Chr7 25370402 A-G Hetero UTR_5_PRIME
SBS Chr7 26135098 A-G Homo INTERGENIC
SBS Chr8 2394823 T-A Hetero INTERGENIC
SBS Chr8 16620387 A-G Hetero INTERGENIC
SBS Chr8 18481507 C-A Hetero INTERGENIC
SBS Chr9 4950870 C-T Hetero INTERGENIC
SBS Chr9 9521285 G-C Homo INTERGENIC
SBS Chr9 15592183 G-A Hetero INTERGENIC
SBS Chr10 3645125 T-C Hetero INTRON
SBS Chr10 9600450 A-G Hetero INTERGENIC
SBS Chr10 9600453 T-A Hetero INTERGENIC
SBS Chr10 11101854 G-A Hetero INTERGENIC
SBS Chr10 17592264 C-A Hetero INTRON
SBS Chr11 17797341 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g139300
SBS Chr11 19599918 C-T Homo INTERGENIC
SBS Chr12 755005 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g010500
SBS Chr12 5549618 C-T Hetero INTERGENIC
SBS Chr12 7739959 C-A Homo INTERGENIC
SBS Chr12 27107237 G-A Hetero SYNONYMOUS_CODING

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1069718 1069724 6
Deletion Chr7 2068184 2068190 6
Deletion Chr7 2232394 2232416 22
Deletion Chr9 4654589 4654590 1
Deletion Chr5 6965087 6965093 6
Deletion Chr9 7509191 7509193 2
Deletion Chr1 9496481 9496487 6
Deletion Chr12 13611001 13620000 8999
Deletion Chr1 14230011 14230013 2
Deletion Chr6 15629902 15629914 12
Deletion Chr6 16119088 16119112 24
Deletion Chr2 16283309 16283311 2
Deletion Chr1 19049714 19049715 1
Deletion Chr5 19861109 19861117 8
Deletion Chr10 20452763 20452764 1 OsKitaake10g156500
Deletion Chr2 23481973 23481975 2
Deletion Chr7 26702191 26702192 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30754089 30754091 1
Insertion Chr2 19738293 19738296 2
Insertion Chr8 6974686 6974689 2
Insertion Chr11 17083238 17083241 2
Insertion Chr9 2667591 2667595 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 8365150 8379587 OsKitaake03g115400
Inversion Chr3 8365155 8379585 OsKitaake03g115400
Inversion Chr3 13901249 13901428
Inversion Chr11 16211152 16850895
Inversion Chr11 17519880 18041825

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 11994526 Chr6 2158813

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5746683	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g073000
SBS	Chr1	31102516	G-T	Hetero	INTERGENIC
SBS	Chr1	32991277	C-T	Hetero	INTERGENIC
SBS	Chr2	724685	G-T	Homo	INTERGENIC
SBS	Chr2	33033820	G-A	Hetero	INTERGENIC
SBS	Chr3	16999490	A-T	Hetero	INTERGENIC
SBS	Chr4	3289146	T-G	Hetero	INTERGENIC
SBS	Chr4	12401618	T-A	Homo	INTERGENIC
SBS	Chr5	23606632	T-A	Hetero	INTERGENIC
SBS	Chr6	988221	G-A	Homo	UTR_3_PRIME
SBS	Chr6	13559418	A-T	Homo	INTERGENIC
SBS	Chr6	13831659	T-A	Homo	INTERGENIC
SBS	Chr6	21215316	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	21255826	A-T	Hetero	INTRON
SBS	Chr7	4383263	G-C	Hetero	INTERGENIC
SBS	Chr7	25370402	A-G	Hetero	UTR_5_PRIME
SBS	Chr7	26135098	A-G	Homo	INTERGENIC
SBS	Chr8	2394823	T-A	Hetero	INTERGENIC
SBS	Chr8	16620387	A-G	Hetero	INTERGENIC
SBS	Chr8	18481507	C-A	Hetero	INTERGENIC
SBS	Chr9	4950870	C-T	Hetero	INTERGENIC
SBS	Chr9	9521285	G-C	Homo	INTERGENIC
SBS	Chr9	15592183	G-A	Hetero	INTERGENIC
SBS	Chr10	3645125	T-C	Hetero	INTRON
SBS	Chr10	9600450	A-G	Hetero	INTERGENIC
SBS	Chr10	9600453	T-A	Hetero	INTERGENIC
SBS	Chr10	11101854	G-A	Hetero	INTERGENIC
SBS	Chr10	17592264	C-A	Hetero	INTRON
SBS	Chr11	17797341	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g139300
SBS	Chr11	19599918	C-T	Homo	INTERGENIC
SBS	Chr12	755005	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g010500
SBS	Chr12	5549618	C-T	Hetero	INTERGENIC
SBS	Chr12	7739959	C-A	Homo	INTERGENIC
SBS	Chr12	27107237	G-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1069718	1069724	6
Deletion	Chr7	2068184	2068190	6
Deletion	Chr7	2232394	2232416	22
Deletion	Chr9	4654589	4654590	1
Deletion	Chr5	6965087	6965093	6
Deletion	Chr9	7509191	7509193	2
Deletion	Chr1	9496481	9496487	6
Deletion	Chr12	13611001	13620000	8999
Deletion	Chr1	14230011	14230013	2
Deletion	Chr6	15629902	15629914	12
Deletion	Chr6	16119088	16119112	24
Deletion	Chr2	16283309	16283311	2
Deletion	Chr1	19049714	19049715	1
Deletion	Chr5	19861109	19861117	8
Deletion	Chr10	20452763	20452764	1	OsKitaake10g156500
Deletion	Chr2	23481973	23481975	2
Deletion	Chr7	26702191	26702192	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8365150	8379587	OsKitaake03g115400
Inversion	Chr3	8365155	8379585	OsKitaake03g115400
Inversion	Chr3	13901249	13901428
Inversion	Chr11	16211152	16850895
Inversion	Chr11	17519880	18041825

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes