Search Kitaake

Mutant Information

Mutant Name	FN2052-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2052-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29662461 G-A Hetero INTERGENIC
SBS Chr2 23623540 T-A Hetero INTERGENIC
SBS Chr3 9411320 T-C Hetero INTERGENIC
SBS Chr3 12868307 C-T Homo INTERGENIC
SBS Chr3 15093148 G-T Hetero INTERGENIC
SBS Chr3 36143947 G-A Hetero INTRON
SBS Chr3 37104805 A-C Hetero INTRON
SBS Chr4 4461266 C-T Homo INTERGENIC
SBS Chr4 14512263 G-A Hetero INTERGENIC
SBS Chr4 14733675 G-A Hetero INTERGENIC
SBS Chr4 24399491 T-C Hetero INTRON
SBS Chr4 30867213 A-T Hetero INTRON
SBS Chr4 36089896 C-T Hetero INTERGENIC
SBS Chr5 6664895 G-A Hetero INTERGENIC
SBS Chr5 24704613 A-C Hetero INTRON
SBS Chr6 11564966 C-T Homo INTERGENIC
SBS Chr6 13386980 G-A Homo INTERGENIC
SBS Chr6 20523088 C-T Hetero INTERGENIC
SBS Chr6 24205135 T-A Homo INTERGENIC
SBS Chr7 5908617 G-A Hetero UTR_5_PRIME
SBS Chr7 9058993 A-T Homo INTERGENIC
SBS Chr7 26791123 A-G Hetero INTERGENIC
SBS Chr7 28535596 C-T Hetero UTR_5_PRIME
SBS Chr8 4771165 T-A Hetero UTR_5_PRIME
SBS Chr8 4810064 A-T Hetero INTERGENIC
SBS Chr8 27479109 G-A Homo INTERGENIC
SBS Chr9 2866624 C-T Hetero INTERGENIC
SBS Chr10 16209367 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 19782951 A-T Homo INTRON
SBS Chr12 1325533 T-A Homo INTRON
SBS Chr12 11155062 G-C Homo INTERGENIC
SBS Chr12 26130751 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 7429906 7429991 85
Deletion Chr5 9861122 9861123 1 OsKitaake05g089500
Deletion Chr2 10266413 10266415 2
Deletion Chr5 12393707 12393708 1
Deletion Chr6 13877151 13877154 3
Deletion Chr5 15830860 15830862 2
Deletion Chr7 19398001 19465000 66999 7
Deletion Chr9 19998061 19998062 1
Deletion Chr5 21768001 21999000 230999 26
Deletion Chr1 30055268 30055271 3
Deletion Chr5 30208052 30208406 354
Deletion Chr1 36839331 36839333 2 OsKitaake01g391900

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 375046 375049 2
Insertion Chr7 4036415 4036418 2
Insertion Chr12 12131658 12131662 3
Insertion Chr12 15480971 15480973 1
Insertion Chr2 13756014 13756016 1
Insertion Chr12 15941367 15941369 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 11057002 11057276

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29662461	G-A	Hetero	INTERGENIC
SBS	Chr2	23623540	T-A	Hetero	INTERGENIC
SBS	Chr3	9411320	T-C	Hetero	INTERGENIC
SBS	Chr3	12868307	C-T	Homo	INTERGENIC
SBS	Chr3	15093148	G-T	Hetero	INTERGENIC
SBS	Chr3	36143947	G-A	Hetero	INTRON
SBS	Chr3	37104805	A-C	Hetero	INTRON
SBS	Chr4	4461266	C-T	Homo	INTERGENIC
SBS	Chr4	14512263	G-A	Hetero	INTERGENIC
SBS	Chr4	14733675	G-A	Hetero	INTERGENIC
SBS	Chr4	24399491	T-C	Hetero	INTRON
SBS	Chr4	30867213	A-T	Hetero	INTRON
SBS	Chr4	36089896	C-T	Hetero	INTERGENIC
SBS	Chr5	6664895	G-A	Hetero	INTERGENIC
SBS	Chr5	24704613	A-C	Hetero	INTRON
SBS	Chr6	11564966	C-T	Homo	INTERGENIC
SBS	Chr6	13386980	G-A	Homo	INTERGENIC
SBS	Chr6	20523088	C-T	Hetero	INTERGENIC
SBS	Chr6	24205135	T-A	Homo	INTERGENIC
SBS	Chr7	5908617	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	9058993	A-T	Homo	INTERGENIC
SBS	Chr7	26791123	A-G	Hetero	INTERGENIC
SBS	Chr7	28535596	C-T	Hetero	UTR_5_PRIME
SBS	Chr8	4771165	T-A	Hetero	UTR_5_PRIME
SBS	Chr8	4810064	A-T	Hetero	INTERGENIC
SBS	Chr8	27479109	G-A	Homo	INTERGENIC
SBS	Chr9	2866624	C-T	Hetero	INTERGENIC
SBS	Chr10	16209367	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	19782951	A-T	Homo	INTRON
SBS	Chr12	1325533	T-A	Homo	INTRON
SBS	Chr12	11155062	G-C	Homo	INTERGENIC
SBS	Chr12	26130751	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	7429906	7429991	85
Deletion	Chr5	9861122	9861123	1	OsKitaake05g089500
Deletion	Chr2	10266413	10266415	2
Deletion	Chr5	12393707	12393708	1
Deletion	Chr6	13877151	13877154	3
Deletion	Chr5	15830860	15830862	2
Deletion	Chr7	19398001	19465000	66999	7
Deletion	Chr9	19998061	19998062	1
Deletion	Chr5	21768001	21999000	230999	26
Deletion	Chr1	30055268	30055271	3
Deletion	Chr5	30208052	30208406	354
Deletion	Chr1	36839331	36839333	2	OsKitaake01g391900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11057002	11057276

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes