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| Mutant Information |
|---|
| Mutant Name | FN2053-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2053-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23420806 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 37684570 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 23123820 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 3252002 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9361685 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 36862800 | C-G | Hetero | SPLICE_SITE_ACCEPTOR | OsKitaake04g322000 |
| SBS | Chr6 | 2539819 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 578757 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 19875176 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 1445990 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g017900 |
| SBS | Chr8 | 11979350 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 24794832 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1542820 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 22353157 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5262116 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 5341440 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 15935586 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15952428 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11463875 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13592680 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16914387 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22867480 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g180900 |
| SBS | Chr12 | 25571959 | G-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 27001 | 149000 | 121999 | 3 |
| Deletion | Chr9 | 4104001 | 4374000 | 269999 | 19 |
| Deletion | Chr10 | 4146503 | 4146504 | 1 | |
| Deletion | Chr3 | 6280035 | 6280155 | 120 | |
| Deletion | Chr10 | 7937895 | 7937903 | 8 | OsKitaake10g050200 |
| Deletion | Chr11 | 11624001 | 11901000 | 276999 | 14 |
| Deletion | Chr2 | 23349380 | 23349382 | 2 | |
| Deletion | Chr6 | 24070475 | 24070477 | 2 | |
| Deletion | Chr5 | 27495810 | 27495814 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 24226352 | 24226355 | 2 | |
| Insertion | Chr7 | 12020386 | 12020388 | 1 | |
| Insertion | Chr10 | 8267973 | 8267982 | 8 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 217437 | 409685 | OsKitaake09g003100 |
| Inversion | Chr5 | 1347990 | 1923654 | OsKitaake05g016800 |
| Inversion | Chr3 | 8992621 | 9352027 | OsKitaake03g123500 |
| Inversion | Chr3 | 8992637 | 9352031 | OsKitaake03g123500 |
| Inversion | Chr11 | 11462477 | 11620252 | |
| Inversion | Chr4 | 23418380 | 23522938 | OsKitaake04g146901 |
| Inversion | Chr4 | 23418385 | 23525915 | OsKitaake04g146901 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 4105001 | Chr1 | 11127780 | OsKitaake09g022100 |
| Translocation | Chr9 | 4107737 | Chr1 | 11202174 | OsKitaake01g137600 |