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Mutant Information

Mutant Name	FN2055-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2055-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2435634 G-A Homo INTERGENIC
SBS Chr1 12027170 G-A Hetero INTERGENIC
SBS Chr1 19709418 C-A Hetero INTERGENIC
SBS Chr1 38375065 G-A Homo INTERGENIC
SBS Chr1 42054944 C-T Homo UTR_3_PRIME
SBS Chr2 4835120 G-C Hetero INTERGENIC
SBS Chr2 9039644 G-A Hetero INTERGENIC
SBS Chr2 17448507 C-A Hetero INTRON
SBS Chr3 6399216 A-G Hetero INTERGENIC
SBS Chr3 14338869 A-G Hetero INTERGENIC
SBS Chr3 27542294 C-A Hetero INTERGENIC
SBS Chr3 32471886 G-A Hetero INTERGENIC
SBS Chr3 36799676 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g410600
SBS Chr4 34685638 A-G Hetero INTERGENIC
SBS Chr5 27388021 C-A Hetero INTRON
SBS Chr6 7849700 G-A Homo INTERGENIC
SBS Chr6 24616051 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g218100
SBS Chr7 27585481 T-A Homo INTRON
SBS Chr10 23288658 A-G Hetero INTERGENIC
SBS Chr11 9777776 T-C Hetero INTERGENIC
SBS Chr11 10742981 G-T Hetero INTERGENIC
SBS Chr11 11113706 G-A Hetero INTERGENIC
SBS Chr12 4725650 T-C Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3866420 3866422 2
Deletion Chr3 4708001 4895000 186999 23
Deletion Chr8 6739526 6739612 86
Deletion Chr4 6769001 6783000 13999
Deletion Chr3 8143087 8143089 2 OsKitaake03g112800
Deletion Chr7 10588587 10588588 1
Deletion Chr12 12497763 12497782 19
Deletion Chr6 15758741 15758897 156
Deletion Chr6 27682001 27703000 20999 2
Deletion Chr5 30165667 30165668 1
Deletion Chr4 30319031 30319052 21
Deletion Chr1 32021001 32030000 8999
Deletion Chr3 35186001 35202000 15999

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 4279856 4279859 2
Insertion Chr2 25139969 25139971 1
Insertion Chr6 5590 5593 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 17840870 18113128 OsKitaake05g137900
Inversion Chr5 17840892 18113136 OsKitaake05g137900
Inversion Chr6 24613773 24854834 OsKitaake06g218100
Inversion Chr6 24613787 24854948 OsKitaake06g218100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2435634	G-A	Homo	INTERGENIC
SBS	Chr1	12027170	G-A	Hetero	INTERGENIC
SBS	Chr1	19709418	C-A	Hetero	INTERGENIC
SBS	Chr1	38375065	G-A	Homo	INTERGENIC
SBS	Chr1	42054944	C-T	Homo	UTR_3_PRIME
SBS	Chr2	4835120	G-C	Hetero	INTERGENIC
SBS	Chr2	9039644	G-A	Hetero	INTERGENIC
SBS	Chr2	17448507	C-A	Hetero	INTRON
SBS	Chr3	6399216	A-G	Hetero	INTERGENIC
SBS	Chr3	14338869	A-G	Hetero	INTERGENIC
SBS	Chr3	27542294	C-A	Hetero	INTERGENIC
SBS	Chr3	32471886	G-A	Hetero	INTERGENIC
SBS	Chr3	36799676	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g410600
SBS	Chr4	34685638	A-G	Hetero	INTERGENIC
SBS	Chr5	27388021	C-A	Hetero	INTRON
SBS	Chr6	7849700	G-A	Homo	INTERGENIC
SBS	Chr6	24616051	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g218100
SBS	Chr7	27585481	T-A	Homo	INTRON
SBS	Chr10	23288658	A-G	Hetero	INTERGENIC
SBS	Chr11	9777776	T-C	Hetero	INTERGENIC
SBS	Chr11	10742981	G-T	Hetero	INTERGENIC
SBS	Chr11	11113706	G-A	Hetero	INTERGENIC
SBS	Chr12	4725650	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3866420	3866422	2
Deletion	Chr3	4708001	4895000	186999	23
Deletion	Chr8	6739526	6739612	86
Deletion	Chr4	6769001	6783000	13999
Deletion	Chr3	8143087	8143089	2	OsKitaake03g112800
Deletion	Chr7	10588587	10588588	1
Deletion	Chr12	12497763	12497782	19
Deletion	Chr6	15758741	15758897	156
Deletion	Chr6	27682001	27703000	20999	2
Deletion	Chr5	30165667	30165668	1
Deletion	Chr4	30319031	30319052	21
Deletion	Chr1	32021001	32030000	8999
Deletion	Chr3	35186001	35202000	15999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	17840870	18113128	OsKitaake05g137900
Inversion	Chr5	17840892	18113136	OsKitaake05g137900
Inversion	Chr6	24613773	24854834	OsKitaake06g218100
Inversion	Chr6	24613787	24854948	OsKitaake06g218100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes