Search Kitaake

Mutant Information

Mutant Name	FN2056-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2056-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 44039452 T-A Hetero INTRON
SBS Chr2 3737650 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g053800
SBS Chr3 16388888 T-C Hetero UTR_3_PRIME
SBS Chr3 20536602 C-T Homo INTERGENIC
SBS Chr3 20536608 C-T Homo INTERGENIC
SBS Chr4 5757798 T-C Hetero INTERGENIC
SBS Chr4 30100791 A-C Hetero INTERGENIC
SBS Chr5 10376953 A-C Hetero INTERGENIC
SBS Chr5 22523490 A-C Hetero UTR_3_PRIME
SBS Chr5 23104234 A-G Hetero INTERGENIC
SBS Chr5 25561065 C-T Hetero INTERGENIC
SBS Chr6 11622880 A-G Hetero INTERGENIC
SBS Chr6 20696236 C-G Homo NON_SYNONYMOUS_CODING OsKitaake06g185200
SBS Chr7 5429409 G-A Hetero INTRON
SBS Chr7 16504336 C-T Homo INTERGENIC
SBS Chr7 16504337 C-T Homo INTERGENIC
SBS Chr8 20938022 A-G Hetero INTERGENIC
SBS Chr9 569385 T-A Homo INTERGENIC
SBS Chr9 19724163 G-T Hetero INTRON
SBS Chr10 1606286 T-C Hetero INTERGENIC
SBS Chr10 17023873 G-A Hetero INTERGENIC
SBS Chr11 9625261 T-G Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 6670998 6671000 2
Deletion Chr8 7683144 7683149 5
Deletion Chr2 11810001 11891000 80999 7
Deletion Chr11 12459798 12459799 1
Deletion Chr11 14893001 15263000 369999 13
Deletion Chr5 26432541 26432546 5
Deletion Chr8 28433453 28433457 4
Deletion Chr2 32466128 32466129 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 15895417 15895420 2
Insertion Chr7 12006316 12006318 1

Inversions: 103

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 15247 15467 OsKitaake12g000100
Inversion Chr12 18592 18986 OsKitaake12g000100
Inversion Chr12 68320 68562 OsKitaake12g000700
Inversion Chr4 159696 160019
Inversion Chr3 208512 208940
Inversion Chr1 265402 265654 OsKitaake01g003800
Inversion Chr11 969956 970256 OsKitaake11g012200
Inversion Chr6 1191510 1191875
Inversion Chr4 1414004 1414378
Inversion Chr7 1590847 1591097
Inversion Chr1 1747266 1747527
Inversion Chr10 1852257 1852402
Inversion Chr10 2091766 2091871 OsKitaake10g016300
Inversion Chr1 2093398 2093818 OsKitaake01g026200
Inversion Chr6 3431479 3431705 OsKitaake06g048101
Inversion Chr10 3504151 3504344 OsKitaake10g026400
Inversion Chr5 3992494 3992786 OsKitaake05g048100
Inversion Chr5 4118030 4118250
Inversion Chr1 4321301 4321496
Inversion Chr3 5486686 5486787 OsKitaake03g077800
Inversion Chr11 5713744 5713864 OsKitaake11g070100
Inversion Chr8 6054127 6054269
Inversion Chr1 6271695 6271861
Inversion Chr10 6287677 6287909
Inversion Chr2 6429567 6429756
Inversion Chr6 6593105 6593404 OsKitaake06g085700
Inversion Chr5 6722579 6722892
Inversion Chr2 6765238 6765413 OsKitaake02g092200
Inversion Chr3 7092995 7093291
Inversion Chr6 7230568 7230856
Inversion Chr1 7331490 7331775
Inversion Chr4 7431949 7432090 OsKitaake04g037700
Inversion Chr1 8562144 8562370
Inversion Chr1 8588604 8588750
Inversion Chr6 9186094 9186581
Inversion Chr12 10334140 10334355
Inversion Chr8 10614867 10615212 OsKitaake08g095900
Inversion Chr11 11245880 11246093
Inversion Chr6 11375816 11375954
Inversion Chr9 11508096 11508411 OsKitaake09g071800
Inversion Chr12 11734714 11735076 OsKitaake12g103300
Inversion Chr9 11885706 11886018
Inversion Chr10 11889118 11889360
Inversion Chr11 11974912 11975327
Inversion Chr2 12315234 12315461 OsKitaake02g139400
Inversion Chr3 12386858 12386994 OsKitaake03g166600
Inversion Chr4 12398857 12399116
Inversion Chr4 12857672 12858052 OsKitaake04g061200
Inversion Chr12 14454725 14454994
Inversion Chr11 14555603 14555948
Inversion Chr12 14584286 14584648 OsKitaake12g116800
Inversion Chr6 14616401 14616631
Inversion Chr3 15426569 15426742
Inversion Chr9 15824185 15824632
Inversion Chr7 15868277 15868598
Inversion Chr5 15971032 15971382
Inversion Chr10 16164567 16164682 OsKitaake10g108300
Inversion Chr1 16281861 16282005
Inversion Chr12 16407173 16407430 OsKitaake12g124600
Inversion Chr4 16536916 16537228
Inversion Chr12 16667966 16668149
Inversion Chr2 16765605 16765869
Inversion Chr8 16937424 16937836 OsKitaake08g128800
Inversion Chr2 17125159 17125451
Inversion Chr3 17954798 17955071 OsKitaake03g219600
Inversion Chr5 17973883 17974117 OsKitaake05g139300
Inversion Chr7 18365350 18365670
Inversion Chr2 18757133 18757290
Inversion Chr2 18798283 18798533
Inversion Chr8 18866050 18866320
Inversion Chr11 20392609 20393025 OsKitaake11g159400
Inversion Chr2 20416528 20416922
Inversion Chr3 20538305 20538537
Inversion Chr8 21510363 21510941
Inversion Chr7 21765046 21765259
Inversion Chr11 21787189 21787367
Inversion Chr8 21913319 21913693 OsKitaake08g165800
Inversion Chr2 21934396 21934789 OsKitaake02g213350
Inversion Chr3 22176016 22176233 OsKitaake03g241635
Inversion Chr3 22418879 22419087
Inversion Chr11 22794282 22794400 OsKitaake11g180700
Inversion Chr3 22989942 22990295
Inversion Chr3 23921185 23921339
Inversion Chr7 24149732 24150082 OsKitaake07g214350
Inversion Chr5 24647444 24647859 OsKitaake05g200800
Inversion Chr5 25123777 25123882
Inversion Chr6 25228021 25228159
Inversion Chr5 25246143 25246270
Inversion Chr6 26043354 26043635 OsKitaake06g232500
Inversion Chr7 26500998 26501296 OsKitaake07g244800
Inversion Chr2 26948768 26949013
Inversion Chr11 27154098 27154258 OsKitaake11g221500
Inversion Chr5 27402654 27402959 OsKitaake05g248500
Inversion Chr2 29127007 29127137
Inversion Chr3 29395815 29395988
Inversion Chr3 30499655 30499779
Inversion Chr1 30523369 30523730
Inversion Chr2 31714580 31714904 OsKitaake02g322700
Inversion Chr3 33494652 33494792
Inversion Chr1 33601201 33601355 OsKitaake01g344500
Inversion Chr1 37353684 37353885 OsKitaake01g398800
Inversion Chr1 38709961 38710269 OsKitaake01g413900
Inversion Chr1 39358113 39358285 OsKitaake01g424400

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8427444 Chr4 18859253

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	44039452	T-A	Hetero	INTRON
SBS	Chr2	3737650	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g053800
SBS	Chr3	16388888	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	20536602	C-T	Homo	INTERGENIC
SBS	Chr3	20536608	C-T	Homo	INTERGENIC
SBS	Chr4	5757798	T-C	Hetero	INTERGENIC
SBS	Chr4	30100791	A-C	Hetero	INTERGENIC
SBS	Chr5	10376953	A-C	Hetero	INTERGENIC
SBS	Chr5	22523490	A-C	Hetero	UTR_3_PRIME
SBS	Chr5	23104234	A-G	Hetero	INTERGENIC
SBS	Chr5	25561065	C-T	Hetero	INTERGENIC
SBS	Chr6	11622880	A-G	Hetero	INTERGENIC
SBS	Chr6	20696236	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g185200
SBS	Chr7	5429409	G-A	Hetero	INTRON
SBS	Chr7	16504336	C-T	Homo	INTERGENIC
SBS	Chr7	16504337	C-T	Homo	INTERGENIC
SBS	Chr8	20938022	A-G	Hetero	INTERGENIC
SBS	Chr9	569385	T-A	Homo	INTERGENIC
SBS	Chr9	19724163	G-T	Hetero	INTRON
SBS	Chr10	1606286	T-C	Hetero	INTERGENIC
SBS	Chr10	17023873	G-A	Hetero	INTERGENIC
SBS	Chr11	9625261	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	6670998	6671000	2
Deletion	Chr8	7683144	7683149	5
Deletion	Chr2	11810001	11891000	80999	7
Deletion	Chr11	12459798	12459799	1
Deletion	Chr11	14893001	15263000	369999	13
Deletion	Chr5	26432541	26432546	5
Deletion	Chr8	28433453	28433457	4
Deletion	Chr2	32466128	32466129	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	15247	15467	OsKitaake12g000100
Inversion	Chr12	18592	18986	OsKitaake12g000100
Inversion	Chr12	68320	68562	OsKitaake12g000700
Inversion	Chr4	159696	160019
Inversion	Chr3	208512	208940
Inversion	Chr1	265402	265654	OsKitaake01g003800
Inversion	Chr11	969956	970256	OsKitaake11g012200
Inversion	Chr6	1191510	1191875
Inversion	Chr4	1414004	1414378
Inversion	Chr7	1590847	1591097
Inversion	Chr1	1747266	1747527
Inversion	Chr10	1852257	1852402
Inversion	Chr10	2091766	2091871	OsKitaake10g016300
Inversion	Chr1	2093398	2093818	OsKitaake01g026200
Inversion	Chr6	3431479	3431705	OsKitaake06g048101
Inversion	Chr10	3504151	3504344	OsKitaake10g026400
Inversion	Chr5	3992494	3992786	OsKitaake05g048100
Inversion	Chr5	4118030	4118250
Inversion	Chr1	4321301	4321496
Inversion	Chr3	5486686	5486787	OsKitaake03g077800
Inversion	Chr11	5713744	5713864	OsKitaake11g070100
Inversion	Chr8	6054127	6054269
Inversion	Chr1	6271695	6271861
Inversion	Chr10	6287677	6287909
Inversion	Chr2	6429567	6429756
Inversion	Chr6	6593105	6593404	OsKitaake06g085700
Inversion	Chr5	6722579	6722892
Inversion	Chr2	6765238	6765413	OsKitaake02g092200
Inversion	Chr3	7092995	7093291
Inversion	Chr6	7230568	7230856
Inversion	Chr1	7331490	7331775
Inversion	Chr4	7431949	7432090	OsKitaake04g037700
Inversion	Chr1	8562144	8562370
Inversion	Chr1	8588604	8588750
Inversion	Chr6	9186094	9186581
Inversion	Chr12	10334140	10334355
Inversion	Chr8	10614867	10615212	OsKitaake08g095900
Inversion	Chr11	11245880	11246093
Inversion	Chr6	11375816	11375954
Inversion	Chr9	11508096	11508411	OsKitaake09g071800
Inversion	Chr12	11734714	11735076	OsKitaake12g103300
Inversion	Chr9	11885706	11886018
Inversion	Chr10	11889118	11889360
Inversion	Chr11	11974912	11975327
Inversion	Chr2	12315234	12315461	OsKitaake02g139400
Inversion	Chr3	12386858	12386994	OsKitaake03g166600
Inversion	Chr4	12398857	12399116
Inversion	Chr4	12857672	12858052	OsKitaake04g061200
Inversion	Chr12	14454725	14454994
Inversion	Chr11	14555603	14555948
Inversion	Chr12	14584286	14584648	OsKitaake12g116800
Inversion	Chr6	14616401	14616631
Inversion	Chr3	15426569	15426742
Inversion	Chr9	15824185	15824632
Inversion	Chr7	15868277	15868598
Inversion	Chr5	15971032	15971382
Inversion	Chr10	16164567	16164682	OsKitaake10g108300
Inversion	Chr1	16281861	16282005
Inversion	Chr12	16407173	16407430	OsKitaake12g124600
Inversion	Chr4	16536916	16537228
Inversion	Chr12	16667966	16668149
Inversion	Chr2	16765605	16765869
Inversion	Chr8	16937424	16937836	OsKitaake08g128800
Inversion	Chr2	17125159	17125451
Inversion	Chr3	17954798	17955071	OsKitaake03g219600
Inversion	Chr5	17973883	17974117	OsKitaake05g139300
Inversion	Chr7	18365350	18365670
Inversion	Chr2	18757133	18757290
Inversion	Chr2	18798283	18798533
Inversion	Chr8	18866050	18866320
Inversion	Chr11	20392609	20393025	OsKitaake11g159400
Inversion	Chr2	20416528	20416922
Inversion	Chr3	20538305	20538537
Inversion	Chr8	21510363	21510941
Inversion	Chr7	21765046	21765259
Inversion	Chr11	21787189	21787367
Inversion	Chr8	21913319	21913693	OsKitaake08g165800
Inversion	Chr2	21934396	21934789	OsKitaake02g213350
Inversion	Chr3	22176016	22176233	OsKitaake03g241635
Inversion	Chr3	22418879	22419087
Inversion	Chr11	22794282	22794400	OsKitaake11g180700
Inversion	Chr3	22989942	22990295
Inversion	Chr3	23921185	23921339
Inversion	Chr7	24149732	24150082	OsKitaake07g214350
Inversion	Chr5	24647444	24647859	OsKitaake05g200800
Inversion	Chr5	25123777	25123882
Inversion	Chr6	25228021	25228159
Inversion	Chr5	25246143	25246270
Inversion	Chr6	26043354	26043635	OsKitaake06g232500
Inversion	Chr7	26500998	26501296	OsKitaake07g244800
Inversion	Chr2	26948768	26949013
Inversion	Chr11	27154098	27154258	OsKitaake11g221500
Inversion	Chr5	27402654	27402959	OsKitaake05g248500
Inversion	Chr2	29127007	29127137
Inversion	Chr3	29395815	29395988
Inversion	Chr3	30499655	30499779
Inversion	Chr1	30523369	30523730
Inversion	Chr2	31714580	31714904	OsKitaake02g322700
Inversion	Chr3	33494652	33494792
Inversion	Chr1	33601201	33601355	OsKitaake01g344500
Inversion	Chr1	37353684	37353885	OsKitaake01g398800
Inversion	Chr1	38709961	38710269	OsKitaake01g413900
Inversion	Chr1	39358113	39358285	OsKitaake01g424400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes