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| Mutant Information |
|---|
| Mutant Name | FN2059-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2059-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6171590 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16412139 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 39753035 | G-T | Homo | START_GAINED | |
| SBS | Chr2 | 8635264 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 17451085 | A-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 31801024 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 12309997 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8796936 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 19073314 | A-G | Hetero | START_GAINED | |
| SBS | Chr6 | 3206772 | G-T | Hetero | INTRON | |
| SBS | Chr6 | 14537212 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 20052846 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 1968770 | C-G | Homo | INTERGENIC | |
| SBS | Chr9 | 7981774 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 11382050 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 14558734 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 20671917 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 10365772 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19597795 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 21094785 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 1646070 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 24089197 | C-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 6754 | 7106 | 352 | |
| Deletion | Chr9 | 4248001 | 4261000 | 12999 | |
| Deletion | Chr10 | 5587001 | 5659000 | 71999 | 7 |
| Deletion | Chr10 | 7390865 | 7390884 | 19 | |
| Deletion | Chr6 | 15064927 | 15064929 | 2 | |
| Deletion | Chr1 | 15181680 | 15181689 | 9 | |
| Deletion | Chr5 | 15426733 | 15426735 | 2 | OsKitaake05g118300 |
| Deletion | Chr10 | 15865507 | 15865828 | 321 | OsKitaake10g103600 |
| Deletion | Chr3 | 18939001 | 19043000 | 103999 | 6 |
| Deletion | Chr3 | 23402477 | 23402480 | 3 | |
| Deletion | Chr3 | 32727118 | 32727121 | 3 |
Inversions: 11
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 4269380 | 4336469 | OsKitaake02g060700 |
| Inversion | Chr2 | 4269384 | 4336465 | OsKitaake02g060700 |
| Inversion | Chr4 | 5401972 | 5546164 | |
| Inversion | Chr4 | 5401974 | 5546087 | |
| Inversion | Chr3 | 9657645 | 9824621 | |
| Inversion | Chr6 | 10332153 | 11130036 | OsKitaake06g117100 |
| Inversion | Chr6 | 10332164 | 11130039 | OsKitaake06g117100 |
| Inversion | Chr5 | 17992479 | 18942651 | OsKitaake05g148200 |
| Inversion | Chr5 | 17992495 | 18943665 | OsKitaake05g148200 |
| Inversion | Chr1 | 40855632 | 40932233 | OsKitaake01g444700 |
| Inversion | Chr1 | 40855634 | 40932235 | OsKitaake01g444700 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 1450847 | Chr6 | 23138618 | |
| Translocation | Chr9 | 3415449 | Chr3 | 18941612 | |
| Translocation | Chr9 | 4246337 | Chr3 | 19044665 | OsKitaake03g228000 |
| Translocation | Chr9 | 4246343 | Chr3 | 9825052 | |
| Translocation | Chr9 | 4246512 | Chr3 | 10877144 | OsKitaake03g149200 |
| Translocation | Chr7 | 12548669 | Chr3 | 19044662 | 2 |