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| Mutant Information |
|---|
| Mutant Name | FN2065-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2065-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 29876999 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 31705252 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 34834834 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 7854113 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 2851873 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 9072316 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 14966736 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 70843 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10221062 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11519641 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 24847788 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 25535401 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 27608714 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 19534369 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7109392 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 14941307 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 15486770 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 17572180 | G-A | Homo | INTRON | |
| SBS | Chr7 | 4290600 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19947841 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 24887825 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2670743 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7084360 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 12746828 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 14499408 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 24292012 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 26778591 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 4233286 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 11327485 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13182841 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 7916210 | A-C | Hetero | INTRON | |
| SBS | Chr10 | 13035657 | A-G | Hetero | INTRON | |
| SBS | Chr12 | 11057727 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 19606777 | A-G | Hetero | UTR_3_PRIME |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 3330752 | 3330756 | 4 | |
| Deletion | Chr7 | 4125216 | 4125224 | 8 | |
| Deletion | Chr2 | 5688310 | 5688312 | 2 | |
| Deletion | Chr1 | 6263981 | 6263985 | 4 | |
| Deletion | Chr5 | 9170413 | 9170414 | 1 | |
| Deletion | Chr11 | 11415567 | 11415574 | 7 | |
| Deletion | Chr5 | 13595801 | 13595812 | 11 | |
| Deletion | Chr3 | 14990812 | 14990813 | 1 | OsKitaake03g194800 |
| Deletion | Chr10 | 15127262 | 15127264 | 2 | |
| Deletion | Chr6 | 17572028 | 17572030 | 2 | |
| Deletion | Chr10 | 20288681 | 20288683 | 2 | |
| Deletion | Chr3 | 27293001 | 27307000 | 13999 | OsKitaake03g281200 |
| Deletion | Chr3 | 28446936 | 28446937 | 1 | OsKitaake03g294600 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 318334 | 318337 | 2 | |
| Insertion | Chr11 | 14625648 | 14625651 | 2 | |
| Insertion | Chr12 | 22409533 | 22409540 | 6 | |
| Insertion | Chr3 | 19362193 | 19362195 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 618193 | 1101996 | OsKitaake10g008300 |
| Inversion | Chr10 | 618234 | 1102010 | OsKitaake10g008300 |
| Inversion | Chr10 | 12388109 | 12612190 | OsKitaake10g076600 |
| Inversion | Chr10 | 12388115 | 12612208 | OsKitaake10g076600 |
| Inversion | Chr1 | 23133131 | 23723353 | OsKitaake01g220500 |
| Inversion | Chr1 | 23133169 | 23723355 | OsKitaake01g220500 |