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Mutant Information

Mutant Name	FN2082-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2082-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4027517 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 17495806 G-T Hetero INTERGENIC
SBS Chr1 17741355 G-A Hetero INTERGENIC
SBS Chr1 43354479 C-T Hetero INTRON
SBS Chr2 5370012 A-T Hetero INTRON
SBS Chr2 6657529 C-T Hetero INTERGENIC
SBS Chr2 19149856 G-T Hetero INTRON
SBS Chr2 22850275 C-T Hetero INTRON
SBS Chr2 26419967 A-G Hetero INTERGENIC
SBS Chr3 7792426 C-T Hetero INTERGENIC
SBS Chr4 30677396 A-T Homo INTERGENIC
SBS Chr5 3853823 A-G Homo NON_SYNONYMOUS_CODING OsKitaake05g046100
SBS Chr5 6691782 G-T Homo INTERGENIC
SBS Chr5 10999347 A-G Homo INTERGENIC
SBS Chr5 15967791 A-G Hetero INTERGENIC
SBS Chr5 18412187 A-T Homo INTERGENIC
SBS Chr6 6073752 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g080000
SBS Chr6 16371555 T-A Hetero INTERGENIC
SBS Chr6 16995099 T-A Hetero INTERGENIC
SBS Chr6 18136914 G-A Hetero INTERGENIC
SBS Chr6 19143386 A-T Hetero INTRON
SBS Chr7 8806306 C-T Hetero INTERGENIC
SBS Chr7 11944415 C-T Hetero INTERGENIC
SBS Chr7 16459922 G-T Hetero INTERGENIC
SBS Chr8 11762679 C-G Homo INTERGENIC
SBS Chr9 1198704 T-A Hetero INTERGENIC
SBS Chr9 1632696 T-A Hetero INTERGENIC
SBS Chr9 3437383 A-T Hetero INTERGENIC
SBS Chr9 12003066 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 5333674 G-C Homo INTERGENIC
SBS Chr11 5666548 G-A Hetero UTR_3_PRIME
SBS Chr11 10171143 G-A Hetero INTERGENIC
SBS Chr11 10171144 C-A Hetero INTERGENIC
SBS Chr11 11199982 T-A Hetero INTERGENIC
SBS Chr11 11199984 T-A Hetero INTERGENIC
SBS Chr11 14418075 C-T Hetero INTERGENIC
SBS Chr11 19502628 G-A Hetero INTERGENIC
SBS Chr11 23305836 C-A Homo INTRON
SBS Chr12 3573364 G-A Homo INTERGENIC
SBS Chr12 8053800 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 653335 653337 2
Deletion Chr11 2490580 2490584 4
Deletion Chr7 2952945 2952946 1
Deletion Chr5 5774433 5774445 12
Deletion Chr7 9071378 9071383 5
Deletion Chr6 13387044 13387045 1
Deletion Chr8 19751650 19751654 4
Deletion Chr10 23855001 23864000 8999 3
Deletion Chr12 24351001 24434000 82999 13
Deletion Chr11 25195066 25195075 9
Deletion Chr1 41165842 41165849 7
Deletion Chr1 43802341 43802343 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22721018 22721021 2
Insertion Chr11 17215403 17215406 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 5172651 5569544 OsKitaake11g065150
Inversion Chr11 5172660 5569555 OsKitaake11g065150
Inversion Chr8 9010393 9264993
Inversion Chr8 9010655 9264999
Inversion Chr12 23482532 24351276 OsKitaake12g188200
Inversion Chr12 23482542 24433724 OsKitaake12g188200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4027517	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	17495806	G-T	Hetero	INTERGENIC
SBS	Chr1	17741355	G-A	Hetero	INTERGENIC
SBS	Chr1	43354479	C-T	Hetero	INTRON
SBS	Chr2	5370012	A-T	Hetero	INTRON
SBS	Chr2	6657529	C-T	Hetero	INTERGENIC
SBS	Chr2	19149856	G-T	Hetero	INTRON
SBS	Chr2	22850275	C-T	Hetero	INTRON
SBS	Chr2	26419967	A-G	Hetero	INTERGENIC
SBS	Chr3	7792426	C-T	Hetero	INTERGENIC
SBS	Chr4	30677396	A-T	Homo	INTERGENIC
SBS	Chr5	3853823	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g046100
SBS	Chr5	6691782	G-T	Homo	INTERGENIC
SBS	Chr5	10999347	A-G	Homo	INTERGENIC
SBS	Chr5	15967791	A-G	Hetero	INTERGENIC
SBS	Chr5	18412187	A-T	Homo	INTERGENIC
SBS	Chr6	6073752	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g080000
SBS	Chr6	16371555	T-A	Hetero	INTERGENIC
SBS	Chr6	16995099	T-A	Hetero	INTERGENIC
SBS	Chr6	18136914	G-A	Hetero	INTERGENIC
SBS	Chr6	19143386	A-T	Hetero	INTRON
SBS	Chr7	8806306	C-T	Hetero	INTERGENIC
SBS	Chr7	11944415	C-T	Hetero	INTERGENIC
SBS	Chr7	16459922	G-T	Hetero	INTERGENIC
SBS	Chr8	11762679	C-G	Homo	INTERGENIC
SBS	Chr9	1198704	T-A	Hetero	INTERGENIC
SBS	Chr9	1632696	T-A	Hetero	INTERGENIC
SBS	Chr9	3437383	A-T	Hetero	INTERGENIC
SBS	Chr9	12003066	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	5333674	G-C	Homo	INTERGENIC
SBS	Chr11	5666548	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	10171143	G-A	Hetero	INTERGENIC
SBS	Chr11	10171144	C-A	Hetero	INTERGENIC
SBS	Chr11	11199982	T-A	Hetero	INTERGENIC
SBS	Chr11	11199984	T-A	Hetero	INTERGENIC
SBS	Chr11	14418075	C-T	Hetero	INTERGENIC
SBS	Chr11	19502628	G-A	Hetero	INTERGENIC
SBS	Chr11	23305836	C-A	Homo	INTRON
SBS	Chr12	3573364	G-A	Homo	INTERGENIC
SBS	Chr12	8053800	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	653335	653337	2
Deletion	Chr11	2490580	2490584	4
Deletion	Chr7	2952945	2952946	1
Deletion	Chr5	5774433	5774445	12
Deletion	Chr7	9071378	9071383	5
Deletion	Chr6	13387044	13387045	1
Deletion	Chr8	19751650	19751654	4
Deletion	Chr10	23855001	23864000	8999	3
Deletion	Chr12	24351001	24434000	82999	13
Deletion	Chr11	25195066	25195075	9
Deletion	Chr1	41165842	41165849	7
Deletion	Chr1	43802341	43802343	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5172651	5569544	OsKitaake11g065150
Inversion	Chr11	5172660	5569555	OsKitaake11g065150
Inversion	Chr8	9010393	9264993
Inversion	Chr8	9010655	9264999
Inversion	Chr12	23482532	24351276	OsKitaake12g188200
Inversion	Chr12	23482542	24433724	OsKitaake12g188200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes