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| Mutant Information |
|---|
| Mutant Name | FN2095-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2095-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 8279377 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g105300 |
| SBS | Chr3 | 27248499 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 27810051 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30585772 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 1229428 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4848979 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 20267572 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27463791 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 31893325 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23540258 | G-T | Hetero | SPLICE_SITE_DONOR | OsKitaake05g205200 |
| SBS | Chr5 | 27608431 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 3860371 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9227859 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 27696780 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 14758238 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17100157 | C-G | Homo | INTRON | |
| SBS | Chr7 | 21763578 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22995821 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7845529 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 12241843 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13243345 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13386059 | C-G | Hetero | INTRON | |
| SBS | Chr8 | 29056685 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 60863 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 19884290 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 19995126 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 10199516 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 19284582 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20088653 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 20145301 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22059872 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 29536158 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14196092 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 20133826 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 25344256 | C-T | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2503001 | 2705000 | 201999 | 23 |
| Deletion | Chr5 | 2778454 | 2778455 | 1 | OsKitaake05g031700 |
| Deletion | Chr11 | 7244672 | 7244673 | 1 | |
| Deletion | Chr2 | 7400015 | 7400016 | 1 | |
| Deletion | Chr5 | 8854427 | 8854429 | 2 | |
| Deletion | Chr1 | 15099867 | 15099875 | 8 | |
| Deletion | Chr1 | 31460734 | 31460735 | 1 | |
| Deletion | Chr1 | 37866356 | 37866363 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 7447863 | 7447866 | 2 | |
| Insertion | Chr11 | 12172379 | 12172382 | 2 | |
| Insertion | Chr11 | 24565680 | 24565683 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 5195864 | 5359562 | OsKitaake11g065301 |
| Inversion | Chr11 | 5195867 | 5359561 | OsKitaake11g065301 |
| Inversion | Chr12 | 14022956 | 14190153 | |
| Inversion | Chr12 | 14201810 | 14244102 |
Translocations: 7
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 5459548 | Chr3 | 24687471 | OsKitaake03g263600 |
| Translocation | Chr11 | 5469160 | Chr3 | 24687448 | OsKitaake03g263600 |
| Translocation | Chr8 | 13099517 | Chr2 | 7409046 | |
| Translocation | Chr10 | 19969395 | Chr8 | 29279116 | OsKitaake08g255300 |
| Translocation | Chr10 | 19969964 | Chr8 | 29279110 | OsKitaake08g255300 |
| Translocation | Chr11 | 27922707 | Chr4 | 25016883 | OsKitaake11g228800 |
| Translocation | Chr11 | 27922722 | Chr4 | 25016646 | OsKitaake11g228800 |