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Mutant Information

Mutant Name	FN2096-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2096-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10086722 C-T Hetero INTERGENIC
SBS Chr1 20400087 T-C Homo INTERGENIC
SBS Chr1 25012150 T-A Hetero INTERGENIC
SBS Chr1 25817409 C-T Hetero INTERGENIC
SBS Chr1 26869236 C-G Hetero UTR_3_PRIME
SBS Chr1 41410829 G-A Hetero INTERGENIC
SBS Chr1 41874141 T-A Hetero INTERGENIC
SBS Chr1 41874142 C-A Hetero INTERGENIC
SBS Chr1 41874143 C-A Hetero INTERGENIC
SBS Chr1 42609925 G-A Hetero INTRON
SBS Chr1 42650633 C-T Hetero INTERGENIC
SBS Chr1 42650634 C-T Hetero INTERGENIC
SBS Chr2 4570456 C-A Homo INTERGENIC
SBS Chr2 19081499 C-T Homo INTERGENIC
SBS Chr2 24977025 A-G Hetero INTERGENIC
SBS Chr2 30520696 T-A Hetero INTERGENIC
SBS Chr4 828314 C-T Homo INTERGENIC
SBS Chr4 10038440 C-T Homo INTRON
SBS Chr4 22640715 G-A Hetero INTRON
SBS Chr4 29609000 G-C Hetero INTERGENIC
SBS Chr5 5850774 T-A Homo INTERGENIC
SBS Chr5 14278634 T-G Hetero INTERGENIC
SBS Chr5 16923520 T-A Homo INTERGENIC
SBS Chr6 5532073 A-G Hetero INTERGENIC
SBS Chr7 2818967 A-T Homo INTERGENIC
SBS Chr8 3015326 G-A Hetero INTERGENIC
SBS Chr8 4761449 A-T Hetero INTERGENIC
SBS Chr8 15322974 C-T Hetero INTERGENIC
SBS Chr8 25431112 C-T Hetero INTRON
SBS Chr8 27061095 C-T Hetero INTRON
SBS Chr10 22680517 T-G Hetero INTERGENIC
SBS Chr11 12596150 C-A Hetero INTERGENIC
SBS Chr12 5136198 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g065000
SBS Chr12 6601215 C-T Hetero INTERGENIC
SBS Chr12 15368341 T-C Homo INTERGENIC
SBS Chr12 19591969 A-G Hetero INTERGENIC
SBS Chr12 20754974 T-A Hetero UTR_3_PRIME

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3914370 3914377 7
Deletion Chr8 9768452 9768457 5
Deletion Chr12 10809585 10809590 5
Deletion Chr11 11254703 11254710 7
Deletion Chr3 11357838 11357851 13
Deletion Chr8 16561013 16561022 9
Deletion Chr12 18725793 18725801 8
Deletion Chr5 18988575 18988581 6
Deletion Chr2 19334618 19334620 2
Deletion Chr5 24608001 24732000 123999 22
Deletion Chr2 25431273 25431275 2
Deletion Chr1 27174742 27174745 3 OsKitaake01g264500
Deletion Chr5 29870297 29870305 8 OsKitaake05g286100

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10086709 10086713 3
Insertion Chr3 25244584 25244589 4
Insertion Chr5 29143039 29143044 4
Insertion Chr8 9393884 9393888 3
Insertion Chr9 7561758 7561761 2
Insertion Chr11 11876774 11876777 2
Insertion Chr6 15924 15927 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 10039905 10365938
Inversion Chr7 10039911 10365936

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10086722	C-T	Hetero	INTERGENIC
SBS	Chr1	20400087	T-C	Homo	INTERGENIC
SBS	Chr1	25012150	T-A	Hetero	INTERGENIC
SBS	Chr1	25817409	C-T	Hetero	INTERGENIC
SBS	Chr1	26869236	C-G	Hetero	UTR_3_PRIME
SBS	Chr1	41410829	G-A	Hetero	INTERGENIC
SBS	Chr1	41874141	T-A	Hetero	INTERGENIC
SBS	Chr1	41874142	C-A	Hetero	INTERGENIC
SBS	Chr1	41874143	C-A	Hetero	INTERGENIC
SBS	Chr1	42609925	G-A	Hetero	INTRON
SBS	Chr1	42650633	C-T	Hetero	INTERGENIC
SBS	Chr1	42650634	C-T	Hetero	INTERGENIC
SBS	Chr2	4570456	C-A	Homo	INTERGENIC
SBS	Chr2	19081499	C-T	Homo	INTERGENIC
SBS	Chr2	24977025	A-G	Hetero	INTERGENIC
SBS	Chr2	30520696	T-A	Hetero	INTERGENIC
SBS	Chr4	828314	C-T	Homo	INTERGENIC
SBS	Chr4	10038440	C-T	Homo	INTRON
SBS	Chr4	22640715	G-A	Hetero	INTRON
SBS	Chr4	29609000	G-C	Hetero	INTERGENIC
SBS	Chr5	5850774	T-A	Homo	INTERGENIC
SBS	Chr5	14278634	T-G	Hetero	INTERGENIC
SBS	Chr5	16923520	T-A	Homo	INTERGENIC
SBS	Chr6	5532073	A-G	Hetero	INTERGENIC
SBS	Chr7	2818967	A-T	Homo	INTERGENIC
SBS	Chr8	3015326	G-A	Hetero	INTERGENIC
SBS	Chr8	4761449	A-T	Hetero	INTERGENIC
SBS	Chr8	15322974	C-T	Hetero	INTERGENIC
SBS	Chr8	25431112	C-T	Hetero	INTRON
SBS	Chr8	27061095	C-T	Hetero	INTRON
SBS	Chr10	22680517	T-G	Hetero	INTERGENIC
SBS	Chr11	12596150	C-A	Hetero	INTERGENIC
SBS	Chr12	5136198	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g065000
SBS	Chr12	6601215	C-T	Hetero	INTERGENIC
SBS	Chr12	15368341	T-C	Homo	INTERGENIC
SBS	Chr12	19591969	A-G	Hetero	INTERGENIC
SBS	Chr12	20754974	T-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3914370	3914377	7
Deletion	Chr8	9768452	9768457	5
Deletion	Chr12	10809585	10809590	5
Deletion	Chr11	11254703	11254710	7
Deletion	Chr3	11357838	11357851	13
Deletion	Chr8	16561013	16561022	9
Deletion	Chr12	18725793	18725801	8
Deletion	Chr5	18988575	18988581	6
Deletion	Chr2	19334618	19334620	2
Deletion	Chr5	24608001	24732000	123999	22
Deletion	Chr2	25431273	25431275	2
Deletion	Chr1	27174742	27174745	3	OsKitaake01g264500
Deletion	Chr5	29870297	29870305	8	OsKitaake05g286100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	10039905	10365938
Inversion	Chr7	10039911	10365936

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes