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Mutant Information

Mutant Name	FN2102-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2102-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 41471769 C-T Homo INTERGENIC
SBS Chr1 42370967 T-A Homo INTERGENIC
SBS Chr2 28094700 G-A Homo UTR_3_PRIME
SBS Chr2 28094701 G-T Homo UTR_3_PRIME
SBS Chr2 28094718 G-T Homo UTR_3_PRIME
SBS Chr2 36920050 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g395500
SBS Chr3 1500458 C-G Hetero INTRON
SBS Chr3 10641252 G-A Hetero INTERGENIC
SBS Chr3 10641253 G-A Hetero INTERGENIC
SBS Chr3 12144576 C-T Hetero UTR_3_PRIME
SBS Chr3 15826464 T-A Homo INTRON
SBS Chr3 15826465 C-T Homo INTRON
SBS Chr3 15826466 T-G Homo INTRON
SBS Chr3 18364110 G-A Hetero INTERGENIC
SBS Chr3 20321289 A-C Homo INTERGENIC
SBS Chr3 23865259 G-A Hetero INTERGENIC
SBS Chr3 36623487 G-A Hetero INTERGENIC
SBS Chr3 36889101 G-A Hetero INTERGENIC
SBS Chr4 845232 G-A Hetero INTERGENIC
SBS Chr4 8283408 T-A Homo INTRON
SBS Chr4 8972925 C-T Hetero INTERGENIC
SBS Chr4 17298098 T-A Homo INTERGENIC
SBS Chr5 3945048 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g047400
SBS Chr5 9224493 G-A Hetero INTERGENIC
SBS Chr5 15415644 G-C Hetero INTERGENIC
SBS Chr6 8975086 G-A Hetero INTRON
SBS Chr6 8975087 G-T Hetero INTRON
SBS Chr7 4336792 G-T Hetero INTERGENIC
SBS Chr7 17796051 A-G Hetero INTERGENIC
SBS Chr8 1179205 A-G Hetero INTERGENIC
SBS Chr8 9708118 C-A Hetero INTERGENIC
SBS Chr8 11166479 A-C Hetero INTERGENIC
SBS Chr8 11166480 C-G Hetero INTERGENIC
SBS Chr8 17382633 C-T Hetero INTERGENIC
SBS Chr8 19374404 G-A Hetero UTR_3_PRIME
SBS Chr8 23674375 A-G Hetero START_GAINED
SBS Chr9 3328070 A-C Hetero INTERGENIC
SBS Chr9 11040944 T-C Hetero INTRON
SBS Chr9 16376178 T-C Homo INTERGENIC
SBS Chr9 21464914 G-A Hetero INTERGENIC
SBS Chr10 5096653 G-T Hetero INTERGENIC
SBS Chr10 15832675 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g103100
SBS Chr12 16557317 C-T Hetero INTERGENIC
SBS Chr12 24034453 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 4128944 4128948 4
Deletion Chr2 4537927 4537929 2
Deletion Chr6 4837678 4837696 18
Deletion Chr11 6256767 6257237 470
Deletion Chr4 8221637 8221986 349 OsKitaake04g042800
Deletion Chr2 13231653 13231655 2
Deletion Chr2 15340992 15340993 1
Deletion Chr6 19334871 19334873 2
Deletion Chr11 20885374 20885456 82
Deletion Chr7 24062434 24062436 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4499896 4499900 3
Insertion Chr4 25911832 25911837 4
Insertion Chr6 10143285 10143288 2
Insertion Chr7 23486279 23486282 2
Insertion Chr10 292775 292778 2
Insertion Chr10 6741897 6741900 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11413807 12218478
Inversion Chr1 11413848 12277814
Inversion Chr10 19904673 20637684 OsKitaake10g149100
Inversion Chr10 19904681 20637702 OsKitaake10g149100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41471769	C-T	Homo	INTERGENIC
SBS	Chr1	42370967	T-A	Homo	INTERGENIC
SBS	Chr2	28094700	G-A	Homo	UTR_3_PRIME
SBS	Chr2	28094701	G-T	Homo	UTR_3_PRIME
SBS	Chr2	28094718	G-T	Homo	UTR_3_PRIME
SBS	Chr2	36920050	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g395500
SBS	Chr3	1500458	C-G	Hetero	INTRON
SBS	Chr3	10641252	G-A	Hetero	INTERGENIC
SBS	Chr3	10641253	G-A	Hetero	INTERGENIC
SBS	Chr3	12144576	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	15826464	T-A	Homo	INTRON
SBS	Chr3	15826465	C-T	Homo	INTRON
SBS	Chr3	15826466	T-G	Homo	INTRON
SBS	Chr3	18364110	G-A	Hetero	INTERGENIC
SBS	Chr3	20321289	A-C	Homo	INTERGENIC
SBS	Chr3	23865259	G-A	Hetero	INTERGENIC
SBS	Chr3	36623487	G-A	Hetero	INTERGENIC
SBS	Chr3	36889101	G-A	Hetero	INTERGENIC
SBS	Chr4	845232	G-A	Hetero	INTERGENIC
SBS	Chr4	8283408	T-A	Homo	INTRON
SBS	Chr4	8972925	C-T	Hetero	INTERGENIC
SBS	Chr4	17298098	T-A	Homo	INTERGENIC
SBS	Chr5	3945048	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g047400
SBS	Chr5	9224493	G-A	Hetero	INTERGENIC
SBS	Chr5	15415644	G-C	Hetero	INTERGENIC
SBS	Chr6	8975086	G-A	Hetero	INTRON
SBS	Chr6	8975087	G-T	Hetero	INTRON
SBS	Chr7	4336792	G-T	Hetero	INTERGENIC
SBS	Chr7	17796051	A-G	Hetero	INTERGENIC
SBS	Chr8	1179205	A-G	Hetero	INTERGENIC
SBS	Chr8	9708118	C-A	Hetero	INTERGENIC
SBS	Chr8	11166479	A-C	Hetero	INTERGENIC
SBS	Chr8	11166480	C-G	Hetero	INTERGENIC
SBS	Chr8	17382633	C-T	Hetero	INTERGENIC
SBS	Chr8	19374404	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	23674375	A-G	Hetero	START_GAINED
SBS	Chr9	3328070	A-C	Hetero	INTERGENIC
SBS	Chr9	11040944	T-C	Hetero	INTRON
SBS	Chr9	16376178	T-C	Homo	INTERGENIC
SBS	Chr9	21464914	G-A	Hetero	INTERGENIC
SBS	Chr10	5096653	G-T	Hetero	INTERGENIC
SBS	Chr10	15832675	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g103100
SBS	Chr12	16557317	C-T	Hetero	INTERGENIC
SBS	Chr12	24034453	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	4128944	4128948	4
Deletion	Chr2	4537927	4537929	2
Deletion	Chr6	4837678	4837696	18
Deletion	Chr11	6256767	6257237	470
Deletion	Chr4	8221637	8221986	349	OsKitaake04g042800
Deletion	Chr2	13231653	13231655	2
Deletion	Chr2	15340992	15340993	1
Deletion	Chr6	19334871	19334873	2
Deletion	Chr11	20885374	20885456	82
Deletion	Chr7	24062434	24062436	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11413807	12218478
Inversion	Chr1	11413848	12277814
Inversion	Chr10	19904673	20637684	OsKitaake10g149100
Inversion	Chr10	19904681	20637702	OsKitaake10g149100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes