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Mutant Information

Mutant Name	FN2103-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2103-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 18614217 T-A Hetero INTERGENIC
SBS Chr3 25250347 C-T Homo INTERGENIC
SBS Chr3 29968369 T-C Hetero INTERGENIC
SBS Chr4 26780592 G-T Homo INTRON
SBS Chr5 5701281 C-T Homo INTERGENIC
SBS Chr5 24569638 C-A Hetero INTERGENIC
SBS Chr6 20949790 A-G Hetero INTERGENIC
SBS Chr6 25466939 C-A Hetero INTERGENIC
SBS Chr7 9235606 G-C Hetero INTERGENIC
SBS Chr7 10363926 T-G Hetero UTR_3_PRIME
SBS Chr7 26020353 G-A Homo INTERGENIC
SBS Chr8 2398428 G-T Hetero INTERGENIC
SBS Chr9 3258385 C-T Homo INTERGENIC
SBS Chr9 9284418 T-C Hetero INTERGENIC
SBS Chr11 2524262 C-T Hetero INTERGENIC
SBS Chr11 11693044 C-T Homo INTERGENIC
SBS Chr11 19492600 A-G Homo INTERGENIC
SBS Chr11 21022738 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g166200
SBS Chr11 24807073 T-A Homo INTERGENIC
SBS Chr11 29460235 G-A Hetero UTR_5_PRIME
SBS Chr12 5010300 G-A Hetero INTERGENIC
SBS Chr12 6127524 A-G Hetero INTERGENIC
SBS Chr12 23760756 A-C Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 85068 85076 8
Deletion Chr2 3237754 3237756 2
Deletion Chr10 3732001 3753000 20999 2
Deletion Chr1 4880919 4881280 361
Deletion Chr4 6458001 6470000 11999
Deletion Chr1 7199367 7199373 6
Deletion Chr4 10371001 10397000 25999 5
Deletion Chr3 10556991 10556993 2
Deletion Chr8 10608777 10608779 2
Deletion Chr12 12597001 12613000 15999 5
Deletion Chr12 13173001 13201000 27999 8
Deletion Chr7 13721001 13727000 5999
Deletion Chr10 16311822 16311830 8
Deletion Chr7 19497706 19497709 3
Deletion Chr5 21904001 21933000 28999
Deletion Chr12 23253486 23253488 2
Deletion Chr11 24492635 24492637 2
Deletion Chr7 24585451 24585455 4
Deletion Chr4 27180917 27180919 2
Deletion Chr4 31303719 31303728 9
Deletion Chr1 42874001 42890000 15999

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16430801 16430804 2
Insertion Chr2 35509979 35509984 4
Insertion Chr4 18074094 18074097 2
Insertion Chr7 28702050 28702053 2
Insertion Chr9 7344810 7344813 2
Insertion Chr12 9071882 9071885 2
Insertion Chr12 17394094 17394097 2
Insertion Chr12 22626798 22626802 3
Insertion Chr1 39814436 39814438 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 1417896 1971015
Inversion Chr11 27888492 27914326
Inversion Chr11 27888557 27914333

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	18614217	T-A	Hetero	INTERGENIC
SBS	Chr3	25250347	C-T	Homo	INTERGENIC
SBS	Chr3	29968369	T-C	Hetero	INTERGENIC
SBS	Chr4	26780592	G-T	Homo	INTRON
SBS	Chr5	5701281	C-T	Homo	INTERGENIC
SBS	Chr5	24569638	C-A	Hetero	INTERGENIC
SBS	Chr6	20949790	A-G	Hetero	INTERGENIC
SBS	Chr6	25466939	C-A	Hetero	INTERGENIC
SBS	Chr7	9235606	G-C	Hetero	INTERGENIC
SBS	Chr7	10363926	T-G	Hetero	UTR_3_PRIME
SBS	Chr7	26020353	G-A	Homo	INTERGENIC
SBS	Chr8	2398428	G-T	Hetero	INTERGENIC
SBS	Chr9	3258385	C-T	Homo	INTERGENIC
SBS	Chr9	9284418	T-C	Hetero	INTERGENIC
SBS	Chr11	2524262	C-T	Hetero	INTERGENIC
SBS	Chr11	11693044	C-T	Homo	INTERGENIC
SBS	Chr11	19492600	A-G	Homo	INTERGENIC
SBS	Chr11	21022738	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g166200
SBS	Chr11	24807073	T-A	Homo	INTERGENIC
SBS	Chr11	29460235	G-A	Hetero	UTR_5_PRIME
SBS	Chr12	5010300	G-A	Hetero	INTERGENIC
SBS	Chr12	6127524	A-G	Hetero	INTERGENIC
SBS	Chr12	23760756	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	85068	85076	8
Deletion	Chr2	3237754	3237756	2
Deletion	Chr10	3732001	3753000	20999	2
Deletion	Chr1	4880919	4881280	361
Deletion	Chr4	6458001	6470000	11999
Deletion	Chr1	7199367	7199373	6
Deletion	Chr4	10371001	10397000	25999	5
Deletion	Chr3	10556991	10556993	2
Deletion	Chr8	10608777	10608779	2
Deletion	Chr12	12597001	12613000	15999	5
Deletion	Chr12	13173001	13201000	27999	8
Deletion	Chr7	13721001	13727000	5999
Deletion	Chr10	16311822	16311830	8
Deletion	Chr7	19497706	19497709	3
Deletion	Chr5	21904001	21933000	28999
Deletion	Chr12	23253486	23253488	2
Deletion	Chr11	24492635	24492637	2
Deletion	Chr7	24585451	24585455	4
Deletion	Chr4	27180917	27180919	2
Deletion	Chr4	31303719	31303728	9
Deletion	Chr1	42874001	42890000	15999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1417896	1971015
Inversion	Chr11	27888492	27914326
Inversion	Chr11	27888557	27914333

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes