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Mutant Information

Mutant Name	FN2104-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2104-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8954118 A-T Homo INTERGENIC
SBS Chr1 44261305 C-A Hetero INTRON
SBS Chr2 7032422 A-T Homo INTERGENIC
SBS Chr2 9128700 G-C Homo INTERGENIC
SBS Chr2 13190240 A-T Hetero INTERGENIC
SBS Chr2 25696009 T-C Homo INTERGENIC
SBS Chr3 20758429 G-A Hetero INTERGENIC
SBS Chr3 23218450 C-T Hetero INTRON
SBS Chr3 25623083 T-C Hetero INTERGENIC
SBS Chr4 11092721 G-A Hetero INTERGENIC
SBS Chr4 16496689 G-A Hetero INTRON
SBS Chr4 23512883 G-A Homo SYNONYMOUS_CODING
SBS Chr4 35028456 T-A Homo INTERGENIC
SBS Chr5 4339655 C-T Homo INTERGENIC
SBS Chr5 16349556 C-T Hetero INTERGENIC
SBS Chr6 11618459 A-G Hetero INTERGENIC
SBS Chr7 8592429 T-A Homo INTRON
SBS Chr9 13890874 C-T Hetero INTERGENIC
SBS Chr9 18669256 A-T Homo INTERGENIC
SBS Chr10 12953878 C-T Homo INTERGENIC
SBS Chr11 13307731 G-A Homo INTERGENIC
SBS Chr11 13307732 C-A Homo INTERGENIC
SBS Chr11 22817030 A-G Hetero INTERGENIC
SBS Chr12 1321778 C-A Hetero INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 867784 868009 225
Deletion Chr3 1839084 1839101 17
Deletion Chr12 9730001 9754000 23999
Deletion Chr8 10354862 10355077 215
Deletion Chr9 13854001 13876000 21999
Deletion Chr10 15123525 15123526 1
Deletion Chr10 15762366 15762454 88
Deletion Chr9 16744001 16762000 17999
Deletion Chr3 20919001 20938000 18999
Deletion Chr1 36418269 36418271 2
Deletion Chr1 38788535 38788539 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 35763581 35763584 2
Insertion Chr2 13865666 13865669 2
Insertion Chr5 1847473 1847477 3

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 2297367 Chr3 16155603 OsKitaake06g029800
Translocation Chr6 2297377 Chr3 16156447 OsKitaake06g029800
Translocation Chr11 25741527 Chr9 3231348

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8954118	A-T	Homo	INTERGENIC
SBS	Chr1	44261305	C-A	Hetero	INTRON
SBS	Chr2	7032422	A-T	Homo	INTERGENIC
SBS	Chr2	9128700	G-C	Homo	INTERGENIC
SBS	Chr2	13190240	A-T	Hetero	INTERGENIC
SBS	Chr2	25696009	T-C	Homo	INTERGENIC
SBS	Chr3	20758429	G-A	Hetero	INTERGENIC
SBS	Chr3	23218450	C-T	Hetero	INTRON
SBS	Chr3	25623083	T-C	Hetero	INTERGENIC
SBS	Chr4	11092721	G-A	Hetero	INTERGENIC
SBS	Chr4	16496689	G-A	Hetero	INTRON
SBS	Chr4	23512883	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr4	35028456	T-A	Homo	INTERGENIC
SBS	Chr5	4339655	C-T	Homo	INTERGENIC
SBS	Chr5	16349556	C-T	Hetero	INTERGENIC
SBS	Chr6	11618459	A-G	Hetero	INTERGENIC
SBS	Chr7	8592429	T-A	Homo	INTRON
SBS	Chr9	13890874	C-T	Hetero	INTERGENIC
SBS	Chr9	18669256	A-T	Homo	INTERGENIC
SBS	Chr10	12953878	C-T	Homo	INTERGENIC
SBS	Chr11	13307731	G-A	Homo	INTERGENIC
SBS	Chr11	13307732	C-A	Homo	INTERGENIC
SBS	Chr11	22817030	A-G	Hetero	INTERGENIC
SBS	Chr12	1321778	C-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	867784	868009	225
Deletion	Chr3	1839084	1839101	17
Deletion	Chr12	9730001	9754000	23999
Deletion	Chr8	10354862	10355077	215
Deletion	Chr9	13854001	13876000	21999
Deletion	Chr10	15123525	15123526	1
Deletion	Chr10	15762366	15762454	88
Deletion	Chr9	16744001	16762000	17999
Deletion	Chr3	20919001	20938000	18999
Deletion	Chr1	36418269	36418271	2
Deletion	Chr1	38788535	38788539	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	2297367	Chr3	16155603	OsKitaake06g029800
Translocation	Chr6	2297377	Chr3	16156447	OsKitaake06g029800
Translocation	Chr11	25741527	Chr9	3231348

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes