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| Mutant Information |
|---|
| Mutant Name | FN2105-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2105-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17584137 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 31584035 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g317400 |
| SBS | Chr1 | 39408698 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7164508 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 29946031 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33529578 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 18016040 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 28887837 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35633167 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 706419 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 19998790 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 16093771 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17763104 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 27544929 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7293205 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14518108 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 23350847 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26643549 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 20043850 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 22402692 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4615237 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 5649269 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 10676448 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14215072 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12573340 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g076400 |
| SBS | Chr11 | 8573121 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8590097 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8590098 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14871784 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 21763823 | G-A | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 8523545 | 8523548 | 3 | |
| Deletion | Chr3 | 15270636 | 15270637 | 1 | |
| Deletion | Chr12 | 19148001 | 19179000 | 30999 | 5 |
| Deletion | Chr1 | 20319130 | 20319139 | 9 | OsKitaake01g199700 |
| Deletion | Chr3 | 26945709 | 26945710 | 1 | |
| Deletion | Chr3 | 28446936 | 28446937 | 1 | OsKitaake03g294600 |
| Deletion | Chr5 | 28920440 | 28920446 | 6 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 13125787 | 13125790 | 2 | |
| Insertion | Chr4 | 25671153 | 25671156 | 2 | |
| Insertion | Chr2 | 18179771 | 18179773 | 1 | |
| Insertion | Chr3 | 26310606 | 26310609 | 2 | |
| Insertion | Chr12 | 22695660 | 22695662 | 1 | OsKitaake12g178800  |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 893793 | Chr5 | 29505086 | |
| Translocation | Chr10 | 893802 | Chr5 | 29546041 | OsKitaake05g281100 |
| Translocation | Chr10 | 13149856 | Chr8 | 1952273 |