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Mutant Information

Mutant Name	FN2109-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2109-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1286040 G-C Hetero INTERGENIC
SBS Chr1 12678801 A-G Hetero INTERGENIC
SBS Chr1 18126301 C-A Homo INTRON
SBS Chr1 19506199 C-T Hetero INTERGENIC
SBS Chr3 1979086 A-G Hetero INTRON
SBS Chr3 11390588 C-A Hetero INTERGENIC
SBS Chr3 14560205 A-T Homo INTERGENIC
SBS Chr3 19907338 C-T Hetero INTERGENIC
SBS Chr4 7709790 C-T Hetero INTERGENIC
SBS Chr4 9402354 C-T Hetero INTERGENIC
SBS Chr4 11240191 C-T Hetero INTERGENIC
SBS Chr4 14198798 T-A Homo INTERGENIC
SBS Chr4 14585315 G-T Homo INTERGENIC
SBS Chr4 16340432 C-T Homo INTERGENIC
SBS Chr5 13614576 G-A Hetero INTERGENIC
SBS Chr5 13614577 G-T Hetero INTERGENIC
SBS Chr5 13614580 T-G Hetero INTERGENIC
SBS Chr6 28930570 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g267300
SBS Chr6 29769845 G-T Homo INTERGENIC
SBS Chr6 29769846 G-A Homo INTERGENIC
SBS Chr7 24422 C-T Hetero INTERGENIC
SBS Chr7 17056378 T-C Hetero INTERGENIC
SBS Chr8 11419085 T-C Hetero INTERGENIC
SBS Chr8 12130761 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g105700
SBS Chr8 13357769 T-A Hetero INTERGENIC
SBS Chr8 15551961 C-A Hetero INTERGENIC
SBS Chr8 16273599 G-A Hetero INTERGENIC
SBS Chr9 7584625 A-G Hetero INTERGENIC
SBS Chr9 7968202 A-T Homo INTERGENIC
SBS Chr9 11727124 T-C Hetero INTERGENIC
SBS Chr9 16256914 C-T Hetero INTRON
SBS Chr9 22391854 G-A Hetero INTERGENIC
SBS Chr10 20484058 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g156800
SBS Chr10 21867668 C-A Hetero INTERGENIC
SBS Chr11 14096024 C-T Homo INTRON
SBS Chr11 29432401 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g241200
SBS Chr12 13427316 G-C Hetero INTERGENIC
SBS Chr12 14875202 C-G Hetero INTERGENIC
SBS Chr12 14875206 C-A Hetero INTERGENIC
SBS Chr12 14875207 G-T Hetero INTERGENIC
SBS Chr12 16093103 A-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 4217093 4217105 12
Deletion Chr2 6460022 6460023 1
Deletion Chr7 8529401 8529404 3
Deletion Chr6 9744674 9744685 11
Deletion Chr11 14232761 14232763 2
Deletion Chr7 19378018 19378025 7
Deletion Chr2 24835710 24835716 6
Deletion Chr7 25476233 25476235 2
Deletion Chr7 27529843 27529846 3 OsKitaake07g256000
Deletion Chr1 28676565 28676580 15

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22236364 22236367 2
Insertion Chr9 14860235 14860239 3
Insertion Chr11 6515908 6515912 3
Insertion Chr3 20033409 20033422 12

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 15680865 15743355
Inversion Chr5 15680893 15746070

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1286040	G-C	Hetero	INTERGENIC
SBS	Chr1	12678801	A-G	Hetero	INTERGENIC
SBS	Chr1	18126301	C-A	Homo	INTRON
SBS	Chr1	19506199	C-T	Hetero	INTERGENIC
SBS	Chr3	1979086	A-G	Hetero	INTRON
SBS	Chr3	11390588	C-A	Hetero	INTERGENIC
SBS	Chr3	14560205	A-T	Homo	INTERGENIC
SBS	Chr3	19907338	C-T	Hetero	INTERGENIC
SBS	Chr4	7709790	C-T	Hetero	INTERGENIC
SBS	Chr4	9402354	C-T	Hetero	INTERGENIC
SBS	Chr4	11240191	C-T	Hetero	INTERGENIC
SBS	Chr4	14198798	T-A	Homo	INTERGENIC
SBS	Chr4	14585315	G-T	Homo	INTERGENIC
SBS	Chr4	16340432	C-T	Homo	INTERGENIC
SBS	Chr5	13614576	G-A	Hetero	INTERGENIC
SBS	Chr5	13614577	G-T	Hetero	INTERGENIC
SBS	Chr5	13614580	T-G	Hetero	INTERGENIC
SBS	Chr6	28930570	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g267300
SBS	Chr6	29769845	G-T	Homo	INTERGENIC
SBS	Chr6	29769846	G-A	Homo	INTERGENIC
SBS	Chr7	24422	C-T	Hetero	INTERGENIC
SBS	Chr7	17056378	T-C	Hetero	INTERGENIC
SBS	Chr8	11419085	T-C	Hetero	INTERGENIC
SBS	Chr8	12130761	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g105700
SBS	Chr8	13357769	T-A	Hetero	INTERGENIC
SBS	Chr8	15551961	C-A	Hetero	INTERGENIC
SBS	Chr8	16273599	G-A	Hetero	INTERGENIC
SBS	Chr9	7584625	A-G	Hetero	INTERGENIC
SBS	Chr9	7968202	A-T	Homo	INTERGENIC
SBS	Chr9	11727124	T-C	Hetero	INTERGENIC
SBS	Chr9	16256914	C-T	Hetero	INTRON
SBS	Chr9	22391854	G-A	Hetero	INTERGENIC
SBS	Chr10	20484058	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g156800
SBS	Chr10	21867668	C-A	Hetero	INTERGENIC
SBS	Chr11	14096024	C-T	Homo	INTRON
SBS	Chr11	29432401	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g241200
SBS	Chr12	13427316	G-C	Hetero	INTERGENIC
SBS	Chr12	14875202	C-G	Hetero	INTERGENIC
SBS	Chr12	14875206	C-A	Hetero	INTERGENIC
SBS	Chr12	14875207	G-T	Hetero	INTERGENIC
SBS	Chr12	16093103	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4217093	4217105	12
Deletion	Chr2	6460022	6460023	1
Deletion	Chr7	8529401	8529404	3
Deletion	Chr6	9744674	9744685	11
Deletion	Chr11	14232761	14232763	2
Deletion	Chr7	19378018	19378025	7
Deletion	Chr2	24835710	24835716	6
Deletion	Chr7	25476233	25476235	2
Deletion	Chr7	27529843	27529846	3	OsKitaake07g256000
Deletion	Chr1	28676565	28676580	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	15680865	15743355
Inversion	Chr5	15680893	15746070

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes