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Mutant Information

Mutant Name	FN2113-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2113-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 402356 T-C Hetero INTERGENIC
SBS Chr1 403159 G-A Hetero INTERGENIC
SBS Chr1 29369413 A-T Hetero INTERGENIC
SBS Chr1 41728547 T-A Homo INTERGENIC
SBS Chr2 3928564 T-A Hetero INTERGENIC
SBS Chr2 5482073 G-T Hetero INTERGENIC
SBS Chr2 8583391 G-A Hetero INTRON
SBS Chr2 20126471 T-C Homo INTERGENIC
SBS Chr2 25857433 G-C Hetero INTERGENIC
SBS Chr2 32561337 G-A Hetero INTERGENIC
SBS Chr3 1241469 G-A Hetero INTERGENIC
SBS Chr3 5380896 G-A Hetero INTRON
SBS Chr3 10296500 G-T Hetero INTERGENIC
SBS Chr3 14534385 C-T Hetero INTERGENIC
SBS Chr3 16035340 C-T Hetero INTERGENIC
SBS Chr3 19994999 G-A Hetero INTRON
SBS Chr3 20954980 T-A Hetero INTRON
SBS Chr3 23199744 T-C Hetero INTERGENIC
SBS Chr3 29679906 G-A Hetero UTR_3_PRIME
SBS Chr3 36361072 T-A Homo INTERGENIC
SBS Chr4 1538502 C-T Hetero INTERGENIC
SBS Chr4 9886476 G-T Hetero INTERGENIC
SBS Chr4 11479140 C-T Hetero INTERGENIC
SBS Chr4 13757008 G-T Hetero INTERGENIC
SBS Chr4 15898198 T-G Hetero INTRON
SBS Chr4 21129722 T-A Hetero INTERGENIC
SBS Chr4 22216002 A-T Hetero INTERGENIC
SBS Chr5 22654346 G-T Homo INTERGENIC
SBS Chr6 8439825 T-G Hetero INTERGENIC
SBS Chr6 25804222 A-T Homo INTERGENIC
SBS Chr7 3288505 G-T Hetero INTERGENIC
SBS Chr7 14396634 C-T Hetero INTERGENIC
SBS Chr7 27986951 C-T Hetero INTERGENIC
SBS Chr9 16253 T-A Homo INTERGENIC
SBS Chr9 15575308 C-T Hetero INTERGENIC
SBS Chr9 16456588 T-G Hetero UTR_5_PRIME
SBS Chr10 3380204 G-A Homo INTERGENIC
SBS Chr10 3867066 T-A Hetero INTERGENIC
SBS Chr10 5813553 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 17150734 C-T Homo INTERGENIC
SBS Chr11 7533941 A-G Hetero INTERGENIC
SBS Chr11 14288466 G-T Hetero UTR_3_PRIME
SBS Chr11 15738802 C-T Hetero INTERGENIC
SBS Chr11 18004424 G-C Hetero INTRON
SBS Chr12 8493162 G-T Homo INTERGENIC
SBS Chr12 9914117 C-T Hetero INTERGENIC
SBS Chr12 19051634 G-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1331761 1331764 3
Deletion Chr11 1797625 1797626 1
Deletion Chr9 3318720 3318722 2
Deletion Chr10 3908001 4205000 296999 25
Deletion Chr6 5142344 5142345 1
Deletion Chr6 6770831 6770832 1
Deletion Chr11 6978797 6978800 3
Deletion Chr8 9517532 9517533 1
Deletion Chr9 14407001 14473000 65999 2
Deletion Chr3 18747309 18747311 2
Deletion Chr6 19484204 19484216 12
Deletion Chr8 19875799 19875801 2
Deletion Chr3 21724001 21866000 141999 14
Deletion Chr11 21888427 21888428 1
Deletion Chr3 34530370 34530372 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 25883556 25883559 2

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 184952 234811 2
Inversion Chr2 184953 234814 2
Inversion Chr2 2869674 3199816 2
Inversion Chr2 2869679 3199819 2
Inversion Chr10 4265698 5126888
Inversion Chr3 4796827 4821658 2
Inversion Chr3 4796843 4821669 2
Inversion Chr9 5938379 6491758 OsKitaake09g034600
Inversion Chr3 10130847 10485441 OsKitaake03g143400
Inversion Chr3 10130852 10485443 OsKitaake03g143400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 20980928 Chr6 29882370 OsKitaake06g279900
Translocation Chr11 21054384 Chr1 37343944 OsKitaake01g398500
Translocation Chr11 21060327 Chr1 37343933 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	402356	T-C	Hetero	INTERGENIC
SBS	Chr1	403159	G-A	Hetero	INTERGENIC
SBS	Chr1	29369413	A-T	Hetero	INTERGENIC
SBS	Chr1	41728547	T-A	Homo	INTERGENIC
SBS	Chr2	3928564	T-A	Hetero	INTERGENIC
SBS	Chr2	5482073	G-T	Hetero	INTERGENIC
SBS	Chr2	8583391	G-A	Hetero	INTRON
SBS	Chr2	20126471	T-C	Homo	INTERGENIC
SBS	Chr2	25857433	G-C	Hetero	INTERGENIC
SBS	Chr2	32561337	G-A	Hetero	INTERGENIC
SBS	Chr3	1241469	G-A	Hetero	INTERGENIC
SBS	Chr3	5380896	G-A	Hetero	INTRON
SBS	Chr3	10296500	G-T	Hetero	INTERGENIC
SBS	Chr3	14534385	C-T	Hetero	INTERGENIC
SBS	Chr3	16035340	C-T	Hetero	INTERGENIC
SBS	Chr3	19994999	G-A	Hetero	INTRON
SBS	Chr3	20954980	T-A	Hetero	INTRON
SBS	Chr3	23199744	T-C	Hetero	INTERGENIC
SBS	Chr3	29679906	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	36361072	T-A	Homo	INTERGENIC
SBS	Chr4	1538502	C-T	Hetero	INTERGENIC
SBS	Chr4	9886476	G-T	Hetero	INTERGENIC
SBS	Chr4	11479140	C-T	Hetero	INTERGENIC
SBS	Chr4	13757008	G-T	Hetero	INTERGENIC
SBS	Chr4	15898198	T-G	Hetero	INTRON
SBS	Chr4	21129722	T-A	Hetero	INTERGENIC
SBS	Chr4	22216002	A-T	Hetero	INTERGENIC
SBS	Chr5	22654346	G-T	Homo	INTERGENIC
SBS	Chr6	8439825	T-G	Hetero	INTERGENIC
SBS	Chr6	25804222	A-T	Homo	INTERGENIC
SBS	Chr7	3288505	G-T	Hetero	INTERGENIC
SBS	Chr7	14396634	C-T	Hetero	INTERGENIC
SBS	Chr7	27986951	C-T	Hetero	INTERGENIC
SBS	Chr9	16253	T-A	Homo	INTERGENIC
SBS	Chr9	15575308	C-T	Hetero	INTERGENIC
SBS	Chr9	16456588	T-G	Hetero	UTR_5_PRIME
SBS	Chr10	3380204	G-A	Homo	INTERGENIC
SBS	Chr10	3867066	T-A	Hetero	INTERGENIC
SBS	Chr10	5813553	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	17150734	C-T	Homo	INTERGENIC
SBS	Chr11	7533941	A-G	Hetero	INTERGENIC
SBS	Chr11	14288466	G-T	Hetero	UTR_3_PRIME
SBS	Chr11	15738802	C-T	Hetero	INTERGENIC
SBS	Chr11	18004424	G-C	Hetero	INTRON
SBS	Chr12	8493162	G-T	Homo	INTERGENIC
SBS	Chr12	9914117	C-T	Hetero	INTERGENIC
SBS	Chr12	19051634	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1331761	1331764	3
Deletion	Chr11	1797625	1797626	1
Deletion	Chr9	3318720	3318722	2
Deletion	Chr10	3908001	4205000	296999	25
Deletion	Chr6	5142344	5142345	1
Deletion	Chr6	6770831	6770832	1
Deletion	Chr11	6978797	6978800	3
Deletion	Chr8	9517532	9517533	1
Deletion	Chr9	14407001	14473000	65999	2
Deletion	Chr3	18747309	18747311	2
Deletion	Chr6	19484204	19484216	12
Deletion	Chr8	19875799	19875801	2
Deletion	Chr3	21724001	21866000	141999	14
Deletion	Chr11	21888427	21888428	1
Deletion	Chr3	34530370	34530372	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	184952	234811	2
Inversion	Chr2	184953	234814	2
Inversion	Chr2	2869674	3199816	2
Inversion	Chr2	2869679	3199819	2
Inversion	Chr10	4265698	5126888
Inversion	Chr3	4796827	4821658	2
Inversion	Chr3	4796843	4821669	2
Inversion	Chr9	5938379	6491758	OsKitaake09g034600
Inversion	Chr3	10130847	10485441	OsKitaake03g143400
Inversion	Chr3	10130852	10485443	OsKitaake03g143400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes