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Mutant Information

Mutant Name	FN2118-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2118-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 646581 C-T Homo INTERGENIC
SBS Chr1 18198338 G-T Homo INTERGENIC
SBS Chr1 20675625 C-T Homo UTR_3_PRIME
SBS Chr1 23588413 T-G Hetero INTERGENIC
SBS Chr1 24112178 G-A Homo INTERGENIC
SBS Chr1 24793326 A-G Hetero INTERGENIC
SBS Chr1 39689608 G-T Hetero INTRON
SBS Chr2 14696455 C-A Hetero INTERGENIC
SBS Chr2 14696456 G-A Hetero INTERGENIC
SBS Chr2 15519919 C-T Hetero INTERGENIC
SBS Chr2 30052748 C-T Homo INTRON
SBS Chr2 33994056 C-T Homo INTERGENIC
SBS Chr2 35105940 A-T Hetero INTERGENIC
SBS Chr3 1387733 T-C Homo INTERGENIC
SBS Chr3 16420437 G-T Hetero INTERGENIC
SBS Chr3 17036033 G-A Homo UTR_3_PRIME
SBS Chr3 20400921 G-A Hetero INTERGENIC
SBS Chr3 27162682 G-T Hetero INTERGENIC
SBS Chr4 31304755 A-T Hetero INTRON
SBS Chr5 3255521 C-T Homo INTERGENIC
SBS Chr5 11401378 G-C Homo INTERGENIC
SBS Chr5 17752801 A-G Homo INTERGENIC
SBS Chr5 19392785 A-G Homo INTRON
SBS Chr5 28159760 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g260600
SBS Chr6 5249728 G-A Homo INTERGENIC
SBS Chr6 12622145 C-T Hetero INTERGENIC
SBS Chr6 13112662 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g139200
SBS Chr6 16565062 A-T Hetero INTERGENIC
SBS Chr6 18049154 C-T Hetero INTERGENIC
SBS Chr6 21260839 A-T Hetero INTRON
SBS Chr8 12112421 A-G Hetero INTRON
SBS Chr9 1221482 G-A Homo INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 11497451 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g071700
SBS Chr9 11497452 C-A Hetero SYNONYMOUS_CODING
SBS Chr11 2234959 A-T Hetero INTERGENIC
SBS Chr11 11796137 G-A Homo INTERGENIC
SBS Chr12 10146834 G-T Hetero INTERGENIC
SBS Chr12 12980486 C-A Homo INTERGENIC
SBS Chr12 20213196 C-T Hetero INTERGENIC
SBS Chr12 21380640 A-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4836542 4836543 1
Deletion Chr9 5057216 5057218 2
Deletion Chr5 13870598 13870599 1
Deletion Chr5 20739168 20739170 2
Deletion Chr7 24267515 24267521 6
Deletion Chr2 29408023 29408027 4
Deletion Chr4 36463062 36463065 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 626257 626261 3
Insertion Chr2 34581277 34581280 2
Insertion Chr3 115159 115162 2
Insertion Chr3 30543670 30543673 2
Insertion Chr4 8105061 8105064 2
Insertion Chr9 15121259 15121262 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 27011181 Chr2 4800353
Translocation Chr8 27015797 Chr2 4800333 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	646581	C-T	Homo	INTERGENIC
SBS	Chr1	18198338	G-T	Homo	INTERGENIC
SBS	Chr1	20675625	C-T	Homo	UTR_3_PRIME
SBS	Chr1	23588413	T-G	Hetero	INTERGENIC
SBS	Chr1	24112178	G-A	Homo	INTERGENIC
SBS	Chr1	24793326	A-G	Hetero	INTERGENIC
SBS	Chr1	39689608	G-T	Hetero	INTRON
SBS	Chr2	14696455	C-A	Hetero	INTERGENIC
SBS	Chr2	14696456	G-A	Hetero	INTERGENIC
SBS	Chr2	15519919	C-T	Hetero	INTERGENIC
SBS	Chr2	30052748	C-T	Homo	INTRON
SBS	Chr2	33994056	C-T	Homo	INTERGENIC
SBS	Chr2	35105940	A-T	Hetero	INTERGENIC
SBS	Chr3	1387733	T-C	Homo	INTERGENIC
SBS	Chr3	16420437	G-T	Hetero	INTERGENIC
SBS	Chr3	17036033	G-A	Homo	UTR_3_PRIME
SBS	Chr3	20400921	G-A	Hetero	INTERGENIC
SBS	Chr3	27162682	G-T	Hetero	INTERGENIC
SBS	Chr4	31304755	A-T	Hetero	INTRON
SBS	Chr5	3255521	C-T	Homo	INTERGENIC
SBS	Chr5	11401378	G-C	Homo	INTERGENIC
SBS	Chr5	17752801	A-G	Homo	INTERGENIC
SBS	Chr5	19392785	A-G	Homo	INTRON
SBS	Chr5	28159760	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g260600
SBS	Chr6	5249728	G-A	Homo	INTERGENIC
SBS	Chr6	12622145	C-T	Hetero	INTERGENIC
SBS	Chr6	13112662	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g139200
SBS	Chr6	16565062	A-T	Hetero	INTERGENIC
SBS	Chr6	18049154	C-T	Hetero	INTERGENIC
SBS	Chr6	21260839	A-T	Hetero	INTRON
SBS	Chr8	12112421	A-G	Hetero	INTRON
SBS	Chr9	1221482	G-A	Homo	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	11497451	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g071700
SBS	Chr9	11497452	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	2234959	A-T	Hetero	INTERGENIC
SBS	Chr11	11796137	G-A	Homo	INTERGENIC
SBS	Chr12	10146834	G-T	Hetero	INTERGENIC
SBS	Chr12	12980486	C-A	Homo	INTERGENIC
SBS	Chr12	20213196	C-T	Hetero	INTERGENIC
SBS	Chr12	21380640	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4836542	4836543	1
Deletion	Chr9	5057216	5057218	2
Deletion	Chr5	13870598	13870599	1
Deletion	Chr5	20739168	20739170	2
Deletion	Chr7	24267515	24267521	6
Deletion	Chr2	29408023	29408027	4
Deletion	Chr4	36463062	36463065	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	27011181	Chr2	4800353
Translocation	Chr8	27015797	Chr2	4800333	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes